1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtaaattttcctaccatagctgtcacatgtgagagactgggatttagttcgtaatggttgcatgtgctgcatttggtttatttttgtcgatagcaacaagaaactttttatccgtctatatggtaactcccaacattgttgtgctacaatgcagGATATAAAATTTGCAGTACATGCTCATCCAACTTTGTCTGAGGTGCTTGATGAGCTATTTAAGTCAGCAAAG
species | Glycine max |
transcript | GLYMA15G15310.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ATCTCATCCACGAGGCATCCAATGCAATAGCATTAGGAACACGTATTCAG GATATAAAATTTGCAGTACATGCTCATCCAACTTTGTCTGAGGTGCTTGATEST: gi|193675594|gb|FK614792.1|FK614792
genomic: ATCTCATCCACGAGGCATCCAATGCAATAGCATTAGGAACACGTATTCAGgtaaattttc ... tacaatgcagGATATAAAATTTGCAGTACATGCTCATCCAACTTTGTCTGAGGTGCTTGAT
EST: ATCTCATCCACGAGGCATCCAATGCAATAGCATTAGGAACACGTATTCAG GATATAAAATTTGCAGTACATGCTCATCCAACTTTGTCTGAGGTGCTTGATEST: gi|19054208|gb|BM732875.1|BM732875
genomic: ATCTCATCCACGAGGCATCCAATGCAATAGCATTAGGAACACGTATTCAGgtaaattttc ... tacaatgcagGATATAAAATTTGCAGTACATGCTCATCCAACTTTGTCTGAGGTGCTTGAT
EST: ATCTCATCCACGAGGCATCCAATGCAATAGCATTAGGAACACGTATTCAG GATATAAAATTTGCAGTACATGCTCATCCAACTTTGTCTGAGGTGCTTGATEST: gi|20814410|gb|BQ298888.1|BQ298888
genomic: ATCTCATCCACGAGGCATCCAATGCAATAGCATTAGGAACACGTATTCAGgtaaattttc ... tacaatgcagGATATAAAATTTGCAGTACATGCTCATCCAACTTTGTCTGAGGTGCTTGAT
EST: ATCTCATCCACGAGGCATCCAATGCAATAGCATTAGGAACACGTATTCAG GATATAAAATTTGCAGTACATGCTCATCCAACTTTGTCTGAGGTGCTTGAT
genomic: ATCTCATCCACGAGGCATCCAATGCAATAGCATTAGGAACACGTATTCAGgtaaattttc ... tacaatgcagGATATAAAATTTGCAGTACATGCTCATCCAACTTTGTCTGAGGTGCTTGAT
gaaactttttatccgtctatatggtaactcccaacattgttgtgctacaatgcagGATATAAAATTTGCAGTACATGCTCATCCAACTTTGTCTGAGGTGCTTGATGAGCTATTTAAGTCAGCAAAG
tggtaac putative branch site (score: 2)
tttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaattttcctaccatagctgtcacatgtgagagactgggatttagttcgtaatggttgcatgtgctgcatttggtttatttttgtcgatagcaacaagaaactttttatccgtctatatggtaactcccaacattgttgtgctacaatgcagGATATAAAATTTGCAGTACATGCTCATCCAACTTTGTCTGAGGTGCTTGATGAGCTATTTAAGTCAGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG