1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gaaagttttattataatcatgaagcagttcttgatctttcttatttactagttgtatgacttgaatttttatggtaagatataaaattcttgctttgcagGGAAATGGTTACACTATTGGGTTTGGTACCTGCTCGGGCAAGATTGTTCCCGCAGCTCCCTGAGGTCAGTATCATTTCATAGTCTTTACCAGTTGTGGTG
species | Glycine max |
transcript | GLYMA15G12100.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: AGAAATTTCTTGAAGATGGAGATGAAGTTATCTTAACTGGATATTGCAAG GGAAATGGTTACACTATTGGGTTTGGTACCTGCTCGGGCAAGATTGTTCCCEST: gi|22930747|gb|BU547886.1|BU547886
genomic: AGAAATTTCTTGAAGATGGAGATGAAGTTATCTTAACTGGATATTGCAAGgttacaatca ... tgctttgcagGGAAATGGTTACACTATTGGGTTTGGTACCTGCTCGGGCAAGATTGTTCCC
EST: AGAAATTTCTTGAAGATGGAGATGAAGTTATCTTAACTGGATATTGCAAG GGAAATGGTTACACTATTGGGTTTGGTACCTGCTCGGGCAAGATTGTTCCCEST: gi|193325176|gb|FK289284.1|FK289284
genomic: AGAAATTTCTTGAAGATGGAGATGAAGTTATCTTAACTGGATATTGCAAGgttacaatca ... tgctttgcagGGAAATGGTTACACTATTGGGTTTGGTACCTGCTCGGGCAAGATTGTTCCC
EST: GAAATTTTCTTGAAGATGGAGATGAAGTTATCTTAACTGGATATTGCAAG GGAAATGGTTACACTATTGGGTTTGGTACCTGCTCGGGCAAGATTGTTCCCEST: gi|207798026|gb|GD768114.1|GD768114
genomic: GAAA-TTTCTTGAAGATGGAGATGAAGTTATCTTAACTGGATATTGCAAGgttacaatca ... tgctttgcagGGAAATGGTTACACTATTGGGTTTGGTACCTGCTCGGGCAAGATTGTTCCC
EST: AGAAATTTCTTGAAGATGGAGATGAAGTTATCTTAACTGGATATTGCAAG GGAAATGGTTACACTATTGGGTTTGGTACCTGCTCGGGCAAGATTGTTCCCEST: gi|208334135|gb|GE132472.1|GE132472
genomic: AGAAATTTCTTGAAGATGGAGATGAAGTTATCTTAACTGGATATTGCAAGgttacaatca ... tgctttgcagGGAAATGGTTACACTATTGGGTTTGGTACCTGCTCGGGCAAGATTGTTCCC
EST: AGAAATTTCTTGAAGATGGAGATGAAGTTATCTTAACTGGATATTGCAAG GGAAACGGTTACACTATTGGGTTTGGTACCTGCTCGGGCAAGATTGTTCCCEST: gi|208126686|gb|GD921142.1|GD921142
genomic: AGAAATTTCTTGAAGATGGAGATGAAGTTATCTTAACTGGATATTGCAAGgttacaatca ... tgctttgcagGGAAATGGTTACACTATTGGGTTTGGTACCTGCTCGGGCAAGATTGTTCCC
EST: AGAAATTTCTTGAAGATGGAGATGAAGTTATCTTAACTGGATATTGCAAG GGAAATGGTTACACTATTGGGTTTGGTACCTGCTCGGGCAAGATTGTTCCCEST: gi|193300915|gb|FK267326.1|FK267326
genomic: AGAAATTTCTTGAAGATGGAGATGAAGTTATCTTAACTGGATATTGCAAGgttacaatca ... tgctttgcagGGAAATGGTTACACTATTGGGTTTGGTACCTGCTCGGGCAAGATTGTTCCC
EST: AGAAATTTCTTGAAGATGGAGATGAAGTTATCTTAACTGGATATTGCAAG GGAAATGGTTACACTATTGGGTTTGGEST: gi|58015544|gb|CX702286.1|CX702286
genomic: AGAAATTTCTTGAAGATGGAGATGAAGTTATCTTAACTGGATATTGCAAGgttacaatca ... tgctttgcagGGAAATGGTTACACTATTGGGTTTGG
EST: AGAAATTTCTTGAAGATGGAGATGAAGTTATCTTAACTGGATATTGCAAG GGAAATGGTTACACTATTGGGTTTGGTACCTGCTCGGGCAAGATTGTTCCCEST: gi|193698582|gb|FK638043.1|FK638043
genomic: AGAAATTTCTTGAAGATGGAGATGAAGTTATCTTAACTGGATATTGCAAGgttacaatca ... tgctttgcagGGAAATGGTTACACTATTGGGTTTGGTACCTGCTCGGGCAAGATTGTTCCC
EST: AGAAATTTCTTGAAGATGGAGATGAAGTTATCTTAACTGGATATTGCAAG GGAAATGGTTACACTATTGGGTTTGGTACCTGCTCGGGCAAGATTGTTCCCEST: gi|193352214|gb|FK317646.1|FK317646
genomic: AGAAATTTCTTGAAGATGGAGATGAAGTTATCTTAACTGGATATTGCAAGgttacaatca ... tgctttgcagGGAAATGGTTACACTATTGGGTTTGGTACCTGCTCGGGCAAGATTGTTCCC
EST: AGAAATTTCTTGAAGATGGAGATGAAGTTATCTTAACTGGATATTGCAAG GGAAATGGTTACACTATTGGGTTTGGTACCTGCTCGGGCAAGATTGTTCCC
genomic: AGAAATTTCTTGAAGATGGAGATGAAGTTATCTTAACTGGATATTGCAAGgttacaatca ... tgctttgcagGGAAATGGTTACACTATTGGGTTTGGTACCTGCTCGGGCAAGATTGTTCCC
tactagttgtatgacttgaatttttatggtaagatataaaattcttgctttgcagGGAAATGGTTACACTATTGGGTTTGGTACCTGCTCGGGCAAGATTGTTCCCGCAGCTCCCTGAGGTCAGTATCATTTCATAGTCTTTACCAGTTGTGGTG
ttcttgcttt CT-rich tract
ttgaatttttatggta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaagttttattataatcatgaagcagttcttgatctttcttatttactagttgtatgacttgaatttttatggtaagatataaaattcttgctttgcagGGAAATGGTTACACTATTGGGTTTGGTACCTGCTCGGGCAAGATTGTTCCCGCAGCTCCCTGAGGTCAGTATCATTTCATAGTCTTTACCAGTTGTGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - -catgaag
- - - - - - - - - - - - - gttcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - tgtatga