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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtaaagatgcctttgtttccttcatgcatagctgaacatggtttttgtatctattatttctcactacattgattacaatcatcgagtttcaacagGTATCAACTCAGATGGTCGGTTCATTCGGTTATAGTGCTCCTGAGTTTGCATTATCAGGAGTATACACTGTAAAAAGTGATGTTTACAGCTTTGGGGTGG

Basic information

species Glycine max
transcript GLYMA15G11820.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G11820.1 (Glycine max), 3'ss of exon 13
lower sequence: AT4G22130.2 (Arabidopsis thaliana), 3'ss of exon 8
gttggtaaagatgcctttgtttccttcatgcatagctgaacatggtttttgtatctattatttctcactacattgattacaatcatcgagtttcaacagGTATCAACTCAGATGGTCGGTTCATTCGGTTATAGTGCTCCTGAGTTTGCATTATCAGGAGTATACACTGTAAAAAGTGATGTTTACAGCTTTGGGGTGG
                  ||       ||| | ||   | ||   ||  | ||  |   |  | |  ||   |   | |   |    |  | ||||||||| ||||||||  |||| |||||||| || || || ||||| ||||||||| | || ||| | ||||| || ||||||||||| ||||  ||||| || |
------------------gtaataacaatggaaag--aatcagatttaatctaattgaaacatttt-ctgagtctttcatggtttatgcatgtcaacagGTTTCAACTCAAGTGGTAGGTTCATTTGGATACAGCGCTCCAGAGTTTGCACTGTCGGGAATTTACACAGTGAAAAGTGATGTATACACTTTTGGAGTAG

upper sequence: GLYMA15G11820.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv10s0116g00100.t01 (Vitis vinifera), 3'ss of exon 13
gttggtaaagatgcctttgtttccttcatgcatagctgaacatggtttttgtatctattatttctcactacattgattacaatcatcgagtttcaacagGTATCAACTCAGATGGTCGGTTCATTCGGTTATAGTGCTCCTGAGTTTGCATTATCAGGAGTATACACTGTAAAAAGTGATGTTTACAGCTTTGGGGTGG
||   ||||   |  |   || |  || |   ||  | |   |  || |  | | |||   | ||   ||||   |||      || ||  ||  |||||| |||||||||||||| |||||||| ||||| ||||||||||| ||||| ||||| ||  |||||||||||||||| ||||| ||||||||||||||||
gtaaataaatggggttgaattcctgtcttaagtattttacagt--ttctcttttgtatgtctgcttgataca--aattgtttctat-gatgtttgacagGTTTCAACTCAGATGGTTGGTTCATTTGGTTACAGTGCTCCTGAATTTGCTTTATCTGGTATATACACTGTAAAAAGCGATGTGTACAGCTTTGGGGTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208277776|gb|GE074867.1|GE074867
EST:     ACCTGTCTGACTGTGGTTTAGCTGCTTTGACACCAAACACTGAGCGGCAG                         GTATCAACTCAGATGGTCGGTTCATTTGGTTATAGTGCTCCTGAGTTTGC
genomic: ACCTGTCTGACTGCGGTTTAGCTGCTTTGACACCAAACACTGAGCGACAGgttggtaaag ... gtttcaacagGTATCAACTCAGATGGTCGGTTCATTCGGTTATAGTGCTCCTGAGTTTGC
EST: gi|7686127|gb|AW756775.1|AW756775
EST:     ACCTGTCTGACTGCGGTTTAGCTGCTTTGACACCAAACACTGAGCGACAG                         GTATCAACTCAGATGGTCGGTTCATTCGGTTATAGTGCTCCTGAGTTTGCA
genomic: ACCTGTCTGACTGCGGTTTAGCTGCTTTGACACCAAACACTGAGCGACAGgttggtaaag ... gtttcaacagGTATCAACTCAGATGGTCGGTTCATTCGGTTATAGTGCTCCTGAGTTTGCA
EST: gi|51343865|gb|CO984598.1|CO984598
EST:     ACCTGTCTGACTGCGGTTTAGCTGCTTTGACACCAAACACTGAGCGACAG                         GTATCAACTCAGATGGTCGGTTCATTCGGTTATAGTGCTCCTGAGTTTGCA
genomic: ACCTGTCTGACTGCGGTTTAGCTGCTTTGACACCAAACACTGAGCGACAGgttggtaaag ... gtttcaacagGTATCAACTCAGATGGTCGGTTCATTCGGTTATAGTGCTCCTGAGTTTGCA
EST: gi|4396176|gb|AI495173.1|AI495173
EST:     ACCTGTCTGACTGCGGTTTAGCTGCTTTGACACCAAACACTGAGCGACAG                         GTATCAACTCAGATGGTCGGTTCATTCGGTTATAGTGCTCCTGAGTTTGCA
genomic: ACCTGTCTGACTGCGGTTTAGCTGCTTTGACACCAAACACTGAGCGACAGgttggtaaag ... gtttcaacagGTATCAACTCAGATGGTCGGTTCATTCGGTTATAGTGCTCCTGAGTTTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttttgtatctattatttctcactacattgattacaatcatcgagtttcaacagGTATCAACTCAGATGGTCGGTTCATTCGGTTATAGTGCTCCTGAGTTTGCATTATCAGGAGTATACACTGTAAAAAGTGATGTTTACAGCTTTGGGGTGG
     tgtatctattattt  TA-rich tract