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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgttacattaattaatgttgcaatgtctataaattcattattaacaaaaatcttttgtcacctaatttaatggattaattaactttgttgttaatttctagCTACTCAATCCTACGGAATTTTTTGCTGACATAGTAGTTGAGCACGAATATCTTGAATGCACTGCATCAGCAATTCAGGTTTTAGTGTTGTTCAAAAAGC

Basic information

species Glycine max
transcript GLYMA15G07110.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192304630|gb|FG998716.1|FG998716
EST:     ATGGAGGTATGACTGCGTGGGAGCCCGCAGGAGCTTATAAATGGTTGGAA                         CTACTCAATCCTACGGAATTTTTTGCTGACATAGTAGTTGAGCACGAATAT
genomic: ATGGAGGTATGACTGCGTGGGAGCCCGCAGGAGCTTATAAATGGTTGGAAgtaagtgtta ... taatttctagCTACTCAATCCTACGGAATTTTTTGCTGACATAGTAGTTGAGCACGAATAT
EST: gi|192296267|gb|FG989059.1|FG989059
EST:     ATGGAGGTATGACTGCGTGGGAGCCCGCAGGAGCTTATAAATGGTTGGAA                         CTACTCAATCCTACGGAATTTTTTGCTGACATAGTAGTTGAGCACGAATAT
genomic: ATGGAGGTATGACTGCGTGGGAGCCCGCAGGAGCTTATAAATGGTTGGAAgtaagtgtta ... taatttctagCTACTCAATCCTACGGAATTTTTTGCTGACATAGTAGTTGAGCACGAATAT
EST: gi|192306249|gb|FG995071.1|FG995071
EST:     ATGGAGGTATGACTGCGTGGGAGCCCGCAGGAGCTTATAAATGGTTGGAA                         CTACTCAATCCTACGGAATTTTTTGCTGACATAGTAGTTGAGCACGAATAT
genomic: ATGGAGGTATGACTGCGTGGGAGCCCGCAGGAGCTTATAAATGGTTGGAAgtaagtgtta ... taatttctagCTACTCAATCCTACGGAATTTTTTGCTGACATAGTAGTTGAGCACGAATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaatcttttgtcacctaatttaatggattaattaactttgttgttaatttctagCTACTCAATCCTACGGAATTTTTTGCTGACATAGTAGTTGAGCACGAATATCTTGAATGCACTGCATCAGCAATTCAGGTTTTAGTGTTGTTCAAAAAGC
                                                tttct  CT-rich tract
                taatttaatggattaa  TA-rich tract