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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatacttgttataagatctaattccaaatatgccccatatttttcatttgagatatgtattctaatttatgttggccttttttttctttcaaaattttcgtattaatcctatagGATGCTCTGGAATCTGATAAGGGATCTGCCTCTGAAAGAAGTGTGAAGTCTAGGGCTATTCTTGCAAGACAAGCTAATGGAGTAGTTCCTGATCCG

Basic information

species Glycine max
transcript GLYMA15G06380.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19269238|gb|BM885494.1|BM885494
EST:     CAGTTTCTAGGCAAAAG                         GATGCTCTGGAATCTGATAAGGGATCTGCCTCTGAAAGAAGTGTGAAGTCT
genomic: CAGTTTCTAGGCAAAAGgtatacttgt ... aatcctatagGATGCTCTGGAATCTGATAAGGGATCTGCCTCTGAAAGAAGTGTGAAGTCT
EST: gi|193351152|gb|FK316728.1|FK316728
EST:     CGCAACAGACCAAGTCCTCTAGGGTTGCTATACCAGTTTCTAGGCAAAAG                         GATGCTCTGGAATCTGATAAGGGATCTGCCTCTGA
genomic: CACAGCAGACCAAGTCGTCTAGGGTTGCTATACCAGTTTCTAGGCAAAAGgtatacttgt ... aatcctatagGATGCTCTGGAATCTGATAAGGGATCTGCCTCTGA
EST: gi|193525627|gb|FK478458.1|FK478458
EST:     TGCTATACCAGTTTCTAGGCAAAAG                         GATGCTCTGGAATCTGATAAGGGATCTGCCTCTGAAAGAAGTGTGAAGTCT
genomic: TGCTATACCAGTTTCTAGGCAAAAGgtatacttgt ... aatcctatagGATGCTCTGGAATCTGATAAGGGATCTGCCTCTGAAAGAAGTGTGAAGTCT
EST: gi|208142641|gb|GD943997.1|GD943997
EST:     CACAGCAGACCAAGTCGTCTAGGGTTGCTATACCAGTTTCTAGGCAAAAG                         GATGCTCTGGAATCTGATAAGGGATCTGCCTCTGAAAGAAGTGTGAAG
genomic: CACAGCAGACCAAGTCGTCTAGGGTTGCTATACCAGTTTCTAGGCAAAAGgtatacttgt ... aatcctatagGATGCTCTGGAATCTGATAAGGGATCTGCCTCTGAAAGAAGTGTGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctaatttatgttggccttttttttctttcaaaattttcgtattaatcctatagGATGCTCTGGAATCTGATAAGGGATCTGCCTCTGAAAGAAGTGTGAAGTCTAGGGCTATTCTTGCAAGACAAGCTAATGGAGTAGTTCCTGATCCG
                                         tattaat  putative branch site (score: 2)
                  ttttttttctttcaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatacttgttataagatctaattccaaatatgccccatatttttcatttgagatatgtattctaatttatgttggccttttttttctttcaaaattttcgtattaatcctatagGATGCTCTGGAATCTGATAAGGGATCTGCCTCTGAAAGAAGTGTGAAGTCTAGGGCTATTCTTGCAAGACAAGCTAATGGAGTAGTTCCTGATCCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT