Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatagttgtttacatatggaatgcttataattataacttttgtttttcttgctgatttgtattttttgtcatacaaattccgtgcagATCAACGACCGGTCACTTCAGGACATGTATATATTTGGAGATCCTTTGCGTGTTCCTATTATTATTGTAGAATGCTTGGAAAACATGCACCGTTCTGCCA

Basic information

species Glycine max
transcript GLYMA15G05480.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G05480.1 (Glycine max), 3'ss of exon 13
lower sequence: AT1G58350.1 (Arabidopsis thaliana), 3'ss of exon 10
gtaatagttgtttacatatggaatgcttataattataacttttgtttttcttgctgatttgtattttttgtca-tacaaat-tccgtgcagATCAACGACCGGTCACTTCAGGACATGTATATATTTGGAGATCCTTTGCGTGTTCCTATTATTATTGTAGAATGCTTGGAAAACATGCACCGTTCTGCCA
    | ||| ||  | | | || |     || ||     | ||| |||| |      || || | ||| |||| ||||  | |  |||||||| ||| |||| ||| | || |||||| ||||| ||||||||||| |||| ||||||||| ||||  | ||| |  |    ||    |   |     |  
--gtttgttcttctctttttgatt-----tagttccctttcttggttttatcaactcttagtttatttggtcaatacatttgttggtgcagATTAACAACCGTTCAATACAAGACATGCATATACTTGGAGATCCTATGCGGGTTCCTATTGTTATCATTGAACGTGTCTTGAATGCACCAAGACGCACTT

upper sequence: GLYMA15G05480.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv12s0055g00430.t01 (Vitis vinifera), 3'ss of exon 9
gtaatagttgtttacatatggaatgcttataattataacttttgtttttcttgctgatttgtattttttgtcatacaaatt--ccgtgcagATCAACGACCGGTCACTTCAGGACATGTATATATTTGGAGATCCTTTGCGTGTTCCTATTATTATTGTAGAATGCTTGGAAAACATGCACCGTTCTGCCA
      ||   |||    |   |  |  |  |||||        | || | |   |||| |   || |   || |||  ||  || ||||||||||| ||| |||| |||| |||||| | ||||||||||||||||  ||| |||||||||| ||||||||| |  | |  ||  |||  ||   | | |
------gtgacttattactatcacacggagcattat----ccaatattccatatagattggagcttatgaacagacatcttttccatgcagATCAACAACCAGTCAATTCAAGACATGCACATATTTGGAGATCCTTCCCGTATTCCTATTATAATTGTAGAACGTGTTGTGAATGTGCCACGGCGTACTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9820523|gb|BE556033.1|BE556033
EST:     CTGCAACAATGCGAGCCGAACTTAACAGGCGTGGTATAGCACAAATGAGG                         ATCAACGACCGGTCACTTCAGGACATGTATATATTTGGAGATCCTTTGCGT
genomic: CTGCAACAATGCGAGCCGAACTTCACAGGCGTGGTATAGCACAAATGAGGgtaatagttg ... ttccgtgcagATCAACGACCGGTCACTTCAGGACATGTATATATTTGGAGATCCTTTGCGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataacttttgtttttcttgctgatttgtattttttgtcatacaaattccgtgcagATCAACGACCGGTCACTTCAGGACATGTATATATTTGGAGATCCTTTGCGTGTTCCTATTATTATTGTAGAATGCTTGGAAAACATGCACCGTTCTGCCA
                    tgatttgtatttttt  TA-rich tract