1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtataatatcacgtagtttctcactggtgtatgttacgtaaaaactggttctctaaggcaattgcttaatatctcattgcagTATGGACAGCTTCTTGGTCATCCCAGGCAAGCTTTATACATGCCGAGTTACATGCCT
species | Glycine max |
transcript | GLYMA15G03190.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: AGGTAGCACAAATGCCGTCTCAAGGATATTTTCATCCGAATGCACCCCAG TATGGACAGCTTCTTGGTCATCCCAGGCAAGCTTTATACATGCCGAGTTACEST: gi|58016071|gb|CX702813.1|CX702813
genomic: AGGTAGCACAAATGCCGTCTCAAGGATATTTTCATCCGAATGCACCCCAGgtataatatc ... ctcattgcagTATGGACAGCTTCTTGGTCATCCCAGGCAAGCTTTATACATGCCGAGTTAC
EST: AGGTAGCACAAATGCCGTCTCAAGGATATTTTCATCCGAATGCACCCCAG TATGGACAGTTTCTTGGTCATCCCAGGCAAGCTTTATACATGCCGAGTTACEST: gi|57574899|gb|CX547874.1|CX547874
genomic: AGGTAGCACAAATGCCGTCTCAAGGATATTTTCATCCGAATGCACCCCAGgtataatatc ... ctcattgcagTATGGACAGCTTCTTGGTCATCCCAGGCAAGCTTTATACATGCCGAGTTAC
EST: AGGTAGCACAAATGCCGTCTCAAGGATATTTTCATCCGAATGCACCCCAG TATGGACAGTTTCTTGGTCATCCCAGGCAAGCTTTATACATGCCGAGTTACEST: gi|15815082|gb|BI787357.1|BI787357
genomic: AGGTAGCACAAATGCCGTCTCAAGGATATTTTCATCCGAATGCACCCCAGgtataatatc ... ctcattgcagTATGGACAGCTTCTTGGTCATCCCAGGCAAGCTTTATACATGCCGAGTTAC
EST: AGGTAGCACAAATGCCGTCTCAAGGATATTTTCATCCGAATGCACCCCAG TATGGACAGCTTCTTGGTCATCCCAGGCAAGCTTTATACATGCCGAGTTACEST: gi|31561922|gb|CD487760.1|CD487760
genomic: AGGTAGCACAAATGCCGTCTCAAGGATATTTTCATCCGAATGCACCCCAGgtataatatc ... ctcattgcagTATGGACAGCTTCTTGGTCATCCCAGGCAAGCTTTATACATGCCGAGTTAC
EST: AGGTAGCACAAATGCCGTCTCAAGGATATTTTCATCCGAATGCACCCCAG TATGGACAGTTTCTTGGTCATCCCAGGCAAGCTTTATACATGCCGAGTTACEST: gi|192295054|gb|FG986773.1|FG986773
genomic: AGGTAGCACAAATGCCGTCTCAAGGATATTTTCATCCGAATGCACCCCAGgtataatatc ... ctcattgcagTATGGACAGCTTCTTGGTCATCCCAGGCAAGCTTTATACATGCCGAGTTAC
EST: AGGTAGCACAAATGCCGTCTCAAGGATATTTTCATCCGAATGCACCCCAG TATGGACAGTTTCTTGGTCATCCCAGGCAAGCTTTATACATGCCGAGTTACEST: gi|51335818|gb|CO979684.1|CO979684
genomic: AGGTAGCACAAATGCCGTCTCAAGGATATTTTCATCCGAATGCACCCCAGgtataatatc ... ctcattgcagTATGGACAGCTTCTTGGTCATCCCAGGCAAGCTTTATACATGCCGAGTTAC
EST: AGGTAGCACAAATGCCGTCTCAAGGATATTTTCATCCGAATGCACCCCAG TATGGACAGTTTCTTGGTCATCCCAGGCAAGCTTTATACATGCCGAGTTACEST: gi|214010103|gb|DB989475.1|DB989475
genomic: AGGTAGCACAAATGCCGTCTCAAGGATATTTTCATCCGAATGCACCCCAGgtataatatc ... ctcattgcagTATGGACAGCTTCTTGGTCATCCCAGGCAAGCTTTATACATGCCGAGTTAC
EST: AGGTAGCACAAATGCCGTCTCAAGGATATTTTCATCCGAATGCACCCCAG TATGGACAGCTTCTTGGTCATCCCAGGCAAGCTTTATACATGCCGAGTTAC
genomic: AGGTAGCACAAATGCCGTCTCAAGGATATTTTCATCCGAATGCACCCCAGgtataatatc ... ctcattgcagTATGGACAGCTTCTTGGTCATCCCAGGCAAGCTTTATACATGCCGAGTTAC
tgtatgttacgtaaaaactggttctctaaggcaattgcttaatatctcattgcagTATGGACAGCTTCTTGGTCATCCCAGGCAAGCTTTATACATGCCGAGTTACATGCCT
gcttaat putative branch site (score: 4)
tctcatt CT-rich tract
ttaatatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataatatcacgtagtttctcactggtgtatgttacgtaaaaactggttctctaaggcaattgcttaatatctcattgcagTATGGACAGCTTCTTGGTCATCCCAGGCAAGCTTTATACATGCCGAGTTACATGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT