1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...ccaaactcaacctatcaactttacttgtcacacactgtcttaatttttcctcctacattcaaagatattcagtatattgataacaatgttctcttcttagGTGTTATGAAGCAGAACTAAAGCGCGAAGAGAGAGAACAGCATCCTATTAACCAGAGGGAAAAACACACCCTTTATCCT
species | Glycine max |
transcript | GLYMA15G00250.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GGCAACCGTTGGGTTTGCAGGCAATGCAAGAATTTTCAGATCTGTGACAA GTGTTATGAAGCAGAACTAAAGCGCGAAGAGAGAGAACAGCATCCTATTAAEST: gi|254344017|gb|GR850927.1|GR850927
genomic: GGCAACCGTTGGGTTTGCAGGCAATGCAAGAATTTTCAGATCTGTGACAAgtaaggattc ... ctcttcttagGTGTTATGAAGCAGAACTAAAGCGCGAAGAGAGAGAACAGCATCCTATTAA
EST: GGCAACCGTTGGGTTTGCAGGCAATGCAAGAATTTTCAGATCTGTGACAA GTGTTATGAAGCAGAACTAAAGCGCGAAGAGAGAGAACAGCATCCTATTAA
genomic: GGCAACCGTTGGGTTTGCAGGCAATGCAAGAATTTTCAGATCTGTGACAAgtaaggattc ... ctcttcttagGTGTTATGAAGCAGAACTAAAGCGCGAAGAGAGAGAACAGCATCCTATTAA
tttcctcctacattcaaagatattcagtatattgataacaatgttctcttcttagGTGTTATGAAGCAGAACTAAAGCGCGAAGAGAGAGAACAGCATCCTATTAACCAGAGGGAAAAACACACCCTTTATCCT
tgataac putative branch site (score: 2)
tgttctcttctt putative PPT
tatattgataacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaaactcaacctatcaactttacttgtcacacactgtcttaatttttcctcctacattcaaagatattcagtatattgataacaatgttctcttcttagGTGTTATGAAGCAGAACTAAAGCGCGAAGAGAGAGAACAGCATCCTATTAACCAGAGGGAAAAACACACCCTTTATCCT
ccaaact
- - - -caaccta
- - - - - - - - - - - - - - cacacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatgtt