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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattacactactatgttgtgtttgtattgctaatagttactttttactgtgcatgtccatctaatttatttgtatgtgattgaatcattagCCTTCTCAAAGAAACGTGTTGCTGTGAGCTCCCTCCTTGCTGTTGGTGCTGTCCATCAACATCTTGTTAAAAATCTTGAGCGCACTAGAGTTGCCTTAAT

Basic information

species Glycine max
transcript GLYMA14G32500.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G32500.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv16s0098g00290.t01 (Vitis vinifera), 3'ss of exon 13
-----------------------------------------------------------------gtattacactact------atgt-tgtgttt----gtattgctaatagttactttttactgtgcatgtccatct--aatttatttgtatgtgattgaa-tcatt----agCCTTCTCAAAGAAACGTGTTGCTGTGAGCTCCCTCCTTGCTGTTGGTGCTGTCCATCAACATCTTGTTAAAAATCTTGAGCGCACTAGAGTTGCCTTAAT
                                                                  |||| ||||  |       ||| | |  ||    || ||   | || || || ||| ||| |  | || || |  || | || | | | | ||| |  | |||    ||| ||||||   || ||||| ||||||||||||||  | || ||||||||||| ||||| ||||| ||| |||| ||||||||||||   ||||  || ||
gtaccacgaattgtaaactgccttgcactgaaaaatcccctatcaaataatatgtactcagaaatatatttcactttttgctgggtgtatatacttttgggtgttttaactattttctgtttgctgggtttttctatttttaactaatctctttatcattcatcttattttgcagCGTTCTCATCAAAGCGTGTAGCTGTGAGCTCCCTATTGGCCGTTGGTGCTGTGCATCAGCATCTGGTTCAAAAGCTTGAGCGCACTCAGGTTGGGTTGAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttactttttactgtgcatgtccatctaatttatttgtatgtgattgaatcattagCCTTCTCAAAGAAACGTGTTGCTGTGAGCTCCCTCCTTGCTGTTGGTGCTGTCCATCAACATCTTGTTAAAAATCTTGAGCGCACTAGAGTTGCCTTAAT
                      atctaat  putative branch site (score: 3)
                      atctaatttatttgta  TA-rich tract