1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gcatgtcactgttttcttctcgataggaaacatgttgaaatatattttgctttcatttgtcttctttgctcttctccatttcaattgacatctatgttagtgtagtgaacttaggtggaaaagtgtcatatcttctcttttcttttatggcagTGCACACACTGATTCCATCATTGCAGAAGATAAAGAAGTTGCTAATGTGTTTCTACGCCAAGTAGACAG
species | Glycine max |
transcript | GLYMA14G07120.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ATTGTGGATGACGTGTATGCAGCTATTGAACATATAAATCTTTATGGAAG TGCACACACTGATTCCATCATTGCAGAAGATAAAGAAGTTGCTAATGTGTTEST: gi|6072812|gb|AW102199.1|AW102199
genomic: ATTGTGGATGACGTGTATGCAGCTATTGAACATATAAATCTTTATGGAAGgcatgtcact ... tttatggcagTGCACACACTGATTCCATCATTGCAGAAGATAAAGAAGTTGCTAATGTGTT
EST: ATTGTGGATGACGTGTATGCAGCTATTGAACATATAAATCTTTATGGAAG TGCACACACTGATTCCATCATTGCAGAAGATAAAGAAGTTGCTAATGTGTTEST: gi|193710229|gb|FK642927.1|FK642927
genomic: ATTGTGGATGACGTGTATGCAGCTATTGAACATATAAATCTTTATGGAAGgcatgtcact ... tttatggcagTGCACACACTGATTCCATCATTGCAGAAGATAAAGAAGTTGCTAATGTGTT
EST: ATTGTGGATGACGTGTATGCAGCTATTGAACATATAAATCTTTATGGAAG TGCACACACTGATTCCATCATTGCAGAAGATAAAGAAGTTGCTAATGTGTTEST: gi|16345479|gb|BI971074.1|BI971074
genomic: ATTGTGGATGACGTGTATGCAGCTATTGAACATATAAATCTTTATGGAAGgcatgtcact ... tttatggcagTGCACACACTGATTCCATCATTGCAGAAGATAAAGAAGTTGCTAATGTGTT
EST: ATTGTGGATGACGTGTATGCAGCTATTGAACATATAAATCTTTATGGAAG TGCACACACTGATTCCATCATTGCAGAAGATAAAGAAGTTGCTAATGTGTTEST: gi|16342203|gb|BI967798.1|BI967798
genomic: ATTGTGGATGACGTGTATGCAGCTATTGAACATATAAATCTTTATGGAAGgcatgtcact ... tttatggcagTGCACACACTGATTCCATCATTGCAGAAGATAAAGAAGTTGCTAATGTGTT
EST: ATTGTGGATGACGTGTATGCAGCTATTGAACATATAAATCTTTATGGAAG TGCACACACTGATTCCATCATTGCAGAAGATAAAGAAGTTGCTAATGTGTTEST: gi|19269540|gb|BM885796.1|BM885796
genomic: ATTGTGGATGACGTGTATGCAGCTATTGAACATATAAATCTTTATGGAAGgcatgtcact ... tttatggcagTGCACACACTGATTCCATCATTGCAGAAGATAAAGAAGTTGCTAATGTGTT
EST: ATTGTGGATGACGTGTATGCAGCTATTGAACATATAAATCTTTATGGAAG TGCACACACTGATTCCATCATTGCAGAAGATAAAGAAGTTGCTAATGTGTT
genomic: ATTGTGGATGACGTGTATGCAGCTATTGAACATATAAATCTTTATGGAAGgcatgtcact ... tttatggcagTGCACACACTGATTCCATCATTGCAGAAGATAAAGAAGTTGCTAATGTGTT
agtgtagtgaacttaggtggaaaagtgtcatatcttctcttttcttttatggcagTGCACACACTGATTCCATCATTGCAGAAGATAAAGAAGTTGCTAATGTGTTTCTACGCCAAGTAGACAG
tgtcatatcttctctt CT-rich tract
ttttcttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatgtcactgttttcttctcgataggaaacatgttgaaatatattttgctttcatttgtcttctttgctcttctccatttcaattgacatctatgttagtgtagtgaacttaggtggaaaagtgtcatatcttctcttttcttttatggcagTGCACACACTGATTCCATCATTGCAGAAGATAAAGAAGTTGCTAATGTGTTTCTACGCCAAGTAGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT