Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcctgtttacttatcaaagaatattgaagcttaatccatagaataattttaatgctattatggcatgtatagcattttgtctacctgtataattatcattgcatgtattgcactttcattttactgtaaacatttggtcctgaacattgtattacttatttgttgctatagGTTGGGTACACACCTGACTACCTCTTCCTTCTGCAAACAATTCTCCGGACAGATCCTCAG

Basic information

species Glycine max
transcript GLYMA14G06340.2
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 13
lower sequence: AT3G08530.1 (Arabidopsis thaliana), 3'ss of exon 13
gtgcctgtttacttatcaaagaatattgaagcttaatccatagaataattttaatgctattatggcatgtatagcattttgtctacctgtataattatcattgcatgtattgcactttcattttactgtaaacatttggtcctgaacattgtattacttatttgttgctatagGTTGGGTACACACCTGACTACCTCTTCCTTCTGCAAACAATTCTCCGGACAGATCCTCAG
                                                                    |||    ||    ||||   ||||||       |     | || | ||    || |  |||      |      | | |||||| | |  |   |||  ||  ||||||||||||||||||| ||||| || ||||||||||| || ||||| ||||||||||||
--------------------------------------------------------------------gtaagcaataagatctata-gtataacctcttctattatttttaccctaaagttctgttgt-----ctcatgaattaccattgtttcatat---tgtgacttcagGTTGGGTACACACCTGATTACCTGTTTCTTCTGCAAACCATACTCCGTACAGATCCTCAG

upper sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 13
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 3'ss of exon 13
gtgcctgtttacttatcaaagaatattgaagcttaatccatagaataattttaatgctattatggcatgtatagcattttgtct--acctgtataattatcattgcatgtattgcactttcattttactgtaaacatttggtcctgaacattgtattacttatttgttgctatagGTTGGGTACACACCTGACTACCTCTTCCTTCTGCAAACAATTCTCCGGACAGATCCTCAG
                                                                    ||| |  |||  || |  |  | |        | |||  | | ||   | |  |  | | |||   ||   |||    | |||||| |||  |   |||  || |||||||||||||||||||| ||| | || ||||||||||| || ||||| || |||||||||
--------------------------------------------------------------------gtaaacaattaagttttaaagtttgccccctccgttgt-tatgtttaccctaaaggtcattgtgctcaagaggt----accattgttttatgt---tgtgactctagGTTGGGTACACACCTGATTACATGTTTCTTCTGCAAACGATACTCCGTACGGATCCTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattttactgtaaacatttggtcctgaacattgtattacttatttgttgctatagGTTGGGTACACACCTGACTACCTCTTCCTTCTGCAAACAATTCTCCGGACAGATCCTCAG
                             attgtattacttattt  TA-rich tract