1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tgtaaattgataataaaactcttggtagttgattcatatctgcaactaattgttaataacatcattcaatagagaatttaatgtttgtattcctgtgtagGTATATGAAACAGTGGAGAAAATGTTATTGAATCCTGAAGAAGCTCTAAAAATGATTAAGCAGACAGAGGAATCAACTACAGTTACCGGTGAACCAAGGA
species | Glycine max |
transcript | GLYMA14G02550.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CTGCTTGTCAAAACAACAAATTGAATGAGAAAGTTGATGGTCTCGTCCAG GTATATGAAACAGTGGAGAAAATGTTATTGAATCCTGAAGAAGCTCTTCAAEST: gi|58022233|gb|CX708974.1|CX708974
genomic: CTGCTTGTCAAAACAACAAATTGAATGAGAAAGTTGATGGTCTCGTCCAGgtgggtactc ... tcctgtgtagGTATATGAAACAGTGGAGAAAATGTTATTGAATCCTGAAGAAGCTCTAAAA
EST: CTGCTTGTCAAAACAACAAATTGAATGAGAAAGTTGATGGTCTCGTCCAG GTATATGAAACAGTGGAGAAAATGTTATTGAATCCTGAAGAAGCTCTAAAAEST: gi|9903004|gb|BE611972.1|BE611972
genomic: CTGCTTGTCAAAACAACAAATTGAATGAGAAAGTTGATGGTCTCGTCCAGgtgggtactc ... tcctgtgtagGTATATGAAACAGTGGAGAAAATGTTATTGAATCCTGAAGAAGCTCTAAAA
EST: CTGCTTGTCAAAACAACAAATTGAATGAGAAAGTTGATGGTCTCGTCCAG GTATATGAAACAGTGGAGAAAATGTTATTGAATCCTGAAGAAGCTCTAAAAEST: gi|21676431|gb|BQ628782.1|BQ628782
genomic: CTGCTTGTCAAAACAACAAATTGAATGAGAAAGTTGATGGTCTCGTCCAGgtgggtactc ... tcctgtgtagGTATATGAAACAGTGGAGAAAATGTTATTGAATCCTGAAGAAGCTCTAAAA
EST: CTGCTTGTCAAAACAACAAATTGAATGAGAAAGTTGATGGTCTCGTCCAT GTATATGAAACAGTGGAGAAAATGTTATTGAATCCTGAAGAAGCTCTAAAA
genomic: CTGCTTGTCAAAACAACAAATTGAATGAGAAAGTTGATGGTCTCGTCCAGgtgggtactc ... tcctgtgtagGTATATGAAACAGTGGAGAAAATGTTATTGAATCCTGAAGAAGCTCTAAAA
ctaattgttaataacatcattcaatagagaatttaatgtttgtattcctgtgtagGTATATGAAACAGTGGAGAAAATGTTATTGAATCCTGAAGAAGCTCTAAAAATGATTAAGCAGACAGAGGAATCAACTACAGTTACCGGTGAACCAAGGA
tattcct CT-rich tract
aatttaatgtttgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtaaattgataataaaactcttggtagttgattcatatctgcaactaattgttaataacatcattcaatagagaatttaatgtttgtattcctgtgtagGTATATGAAACAGTGGAGAAAATGTTATTGAATCCTGAAGAAGCTCTAAAAATGATTAAGCAGACAGAGGAATCAACTACAGTTACCGGTGAACCAAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - -aataaaa
- - - - - - - - - - - - - - - - - - - -ctgcaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt