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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataaataatatcacgtgtagtttctcactggtgtctgttaagtaaatattggttcttttaaggtaattgcttaatatctcattgcagTATGGACAGCTTCTTGGTCATCCTAGGCAATCTTTATACATGCCGAGTTACTTGCCT

Basic information

species Glycine max
transcript GLYMA13G42230.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21887595|gb|BQ740808.1|BQ740808
EST:     AGGTAGCACAAATGCCGTCTCAAGGATATTTTCATCCGAATGCACCCCAG                         TATGGACAGCTTCTTGGTCATCCTAGGCAATCTTTATACATGCCGAGTTAC
genomic: AGGTAGCACAAATGCCGTCTCAAGGATATTTTCATCCGAATGCACCCCAGgtataaataa ... ctcattgcagTATGGACAGCTTCTTGGTCATCCTAGGCAATCTTTATACATGCCGAGTTAC
EST: gi|24136028|gb|BU926538.1|BU926538
EST:     AGGTAGCACAAATGCCGTCTCAAGGATATTTTCATCCGAATGCACCCCAG                         TATGGACAGCTTCTTGGTCATCCTAGGCAATCTTTATACATGCCGAGTTAC
genomic: AGGTAGCACAAATGCCGTCTCAAGGATATTTTCATCCGAATGCACCCCAGgtataaataa ... ctcattgcagTATGGACAGCTTCTTGGTCATCCTAGGCAATCTTTATACATGCCGAGTTAC
EST: gi|22930642|gb|BU547789.1|BU547789
EST:     AGGTAGCACAAATGCCGTCTCAAGGATATTTTCATCCGAATGCACCCCAG                         TATGGACAGCTTCTTGGTCATCCTAGGCAATCTTTATACATGCCGAGTTAC
genomic: AGGTAGCACAAATGCCGTCTCAAGGATATTTTCATCCGAATGCACCCCAGgtataaataa ... ctcattgcagTATGGACAGCTTCTTGGTCATCCTAGGCAATCTTTATACATGCCGAGTTAC
EST: gi|9205412|gb|BE331636.1|BE331636
EST:     AGGTAGCACAAATGCCGTCTCAAGGATATTTTCATCCGAATGCACCCCAG                         TATGGACAGCTTCTTGGTCATCCTAGGCAATCTTTATACATGCCGAGTTAC
genomic: AGGTAGCACAAATGCCGTCTCAAGGATATTTTCATCCGAATGCACCCCAGgtataaataa ... ctcattgcagTATGGACAGCTTCTTGGTCATCCTAGGCAATCTTTATACATGCCGAGTTAC
EST: gi|14205753|gb|BG839431.1|BG839431
EST:     AGGTAGCACAAATGCCGTCTCAAGGATATTTTCATCCGAATGCACCCCAG                         TATGGACAGCTTCTTGGTCATCCTAGGCAATCTTTATACATGCCGAGTTAC
genomic: AGGTAGCACAAATGCCGTCTCAAGGATATTTTCATCCGAATGCACCCCAGgtataaataa ... ctcattgcagTATGGACAGCTTCTTGGTCATCCTAGGCAATCTTTATACATGCCGAGTTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctgttaagtaaatattggttcttttaaggtaattgcttaatatctcattgcagTATGGACAGCTTCTTGGTCATCCTAGGCAATCTTTATACATGCCGAGTTACTTGCCT
                                    gcttaat  putative branch site (score: 4)
                                            tctcatt  CT-rich tract
     ttaagtaaatatt  TA-rich tract