1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtattagaccttgtgtctctattaagtattaactctagatgcccttcttaacgccacattttgtatttagaaactgaagaaagttgagcagcatttttggtcctcagGAAATGGAAGATGATGTGATCTGAGACACGTCTTGTATTATTTCCCCCATTGATGGTGAGGGTGTTGGCTGCAAAGATTCCCAATTCTTTATGCTTGATA
species | Glycine max |
transcript | GLYMA13G40320.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CCCATATCTTTCTTATTGGTTCAGATTCCGAGTAGAG GAAATGGAAGATGATGTGATCTGAGACACGTCTTGTATTATTTCCCCCATTEST: gi|208261474|gb|GE059129.1|GE059129
genomic: CCCATATCTTTC-TATTGGTTCAGATTCCGAGTAGAGgtattagacc ... tggtcctcagGAAATGGAAGATGATGTGATCTGAGACACGTCTTGTATTATTTCCCCCATT
EST: TCAGTAAGGCCCCGCCCATATCTTTCTATTGGTTCAGATTCCGAGTAGAG GAAATGGAAGATGATGEST: gi|208108927|gb|GD907639.1|GD907639
genomic: TCAGTAAGGCCCCGCCCATATCTTTCTATTGGTTCAGATTCCGAGTAGAGgtattagacc ... tggtcctcagGAAATGGAAGATGATG
EST: TCAGTAAGGCCCCGCCCATATCTTTCTATTGGTTCAGATTCCGAGTAGAG GAAATGGAAGATGATGTGATCTGAGACACGTCTTGTATTATTTCCCCCATTEST: gi|193653877|gb|FK595675.1|FK595675
genomic: TCAGTAAGGCCCCGCCCATATCTTTCTATTGGTTCAGATTCCGAGTAGAGgtattagacc ... tggtcctcagGAAATGGAAGATGATGTGATCTGAGACACGTCTTGTATTATTTCCCCCATT
EST: AAGGCCCCGCCCATATCTTTCTATTGGTTCAGATTCCGAGTAGAG GAAATGGAAGATGATGTGATCTGAGACACGTCTTGTATTATTTCCCCCATTEST: gi|193345194|gb|FK309650.1|FK309650
genomic: AAGGCCCCGCCCATATCTTTCTATTGGTTCAGATTCCGAGTAGAGgtattagacc ... tggtcctcagGAAATGGAAGATGATGTGATCTGAGACACGTCTTGTATTATTTCCCCCATT
EST: TCAGTAAGGCCCCGCCCATATCTTTCTATTGGTTCAGATTCCGAGTAGAG GAAATGGAAGATGATGTGATCTGAGACACGTCTTGTATTATTTCCCCCATT
genomic: TCAGTAAGGCCCCGCCCATATCTTTCTATTGGTTCAGATTCCGAGTAGAGgtattagacc ... tggtcctcagGAAATGGAAGATGATGTGATCTGAGACACGTCTTGTATTATTTCCCCCATT
gccacattttgtatttagaaactgaagaaagttgagcagcatttttggtcctcagGAAATGGAAGATGATGTGATCTGAGACACGTCTTGTATTATTTCCCCCATTGATGGTGAGGGTGTTGGCTGCAAAGATTCCCAATTCTTTATGCTTGATA
cattttt CT-rich tract
attttgtatttagaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattagaccttgtgtctctattaagtattaactctagatgcccttcttaacgccacattttgtatttagaaactgaagaaagttgagcagcatttttggtcctcagGAAATGGAAGATGATGTGATCTGAGACACGTCTTGTATTATTTCCCCCATTGATGGTGAGGGTGTTGGCTGCAAAGATTCCCAATTCTTTATGCTTGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG