1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...ctactcatcatgacggtacatatagtctttacttcttttgcaaaagattttgtattaatttccaaatataattttttggatatgtatgcataattttcagGGAGAGTCTGACAAAGGAAAAGGGCCAAGGGATTCG
species | Glycine max |
transcript | GLYMA13G39990.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TTGATTCACAATGGATTGTTCATCAAGTAATTCCTTCTCTTGGGAACCAG GGAGAGTCTGACAAAGGAAAAGGGCCAAGGGATTCGEST: gi|209728921|gb|BW654988.1|BW654988
genomic: TTGATTCACAATGGATTGTTCATCAAGTAATTCCTTCTCTTGGGAACCAGgttagacatc ... taattttcagGGAGAGTCTGACAAAGGAAAAGGGCCAAGGGATTCG
EST: TTGATTCACAATGGATTGTTCATCAAGTAATTCCTTCTCTTGGGAACCAG GGAGAGTCTGACAAAGGAAAAGGGCCAAGGGATTCGEST: gi|20449491|gb|BQ253615.1|BQ253615
genomic: TTGATTCACAATGGATTGTTCATCAAGTAATTCCTTCTCTTGGGAACCAGgttagacatc ... taattttcagGGAGAGTCTGACAAAGGAAAAGGGCCAAGGGATTCG
EST: TTGATTCACAATGGATTGTTCATCAAGTAATTCCTTCTCTTGGGAACCAG GGAGAGTCTGACAAAGGAAAAGGGCCAAGGGATTCGEST: gi|12691502|gb|BG157838.1|BG157838
genomic: TTGATTCACAATGGATTGTTCATCAAGTAATTCCTTCTCTTGGGAACCAGgttagacatc ... taattttcagGGAGAGTCTGACAAAGGAAAAGGGCCAAGGGATTCG
EST: TTGATTCACAATGGATTGTTCATCAAGTAATTCCTTCTCTTGGGAACCAG GGAGAGTCTGACAAAGGAAAAGGGCCAAGGGATTCTEST: gi|10233381|gb|BE802269.1|BE802269
genomic: TTGATTCACAATGGATTGTTCATCAAGTAATTCCTTCTCTTGGGAACCAGgttagacatc ... taattttcagGGAGAGTCTGACAAAGGAAAAGGGCCAAGGGATTCG
EST: TTGATTCACAATGGATTGTTCATCAAGTAATTCCTTCTCTTGGGAACCAG GGAGAGTCTGACAAAGGAAAAGGGCCAAGGGATTCGEST: gi|10234562|gb|BE803450.1|BE803450
genomic: TTGATTCACAATGGATTGTTCATCAAGTAATTCCTTCTCTTGGGAACCAGgttagacatc ... taattttcagGGAGAGTCTGACAAAGGAAAAGGGCCAAGGGATTCG
EST: TTGATTCACAATGGATTGTTCATCAAGTAATTCCTTCTCTTGGGAACCAG GGAGAGTCTGACAAAGGAAAAGGGCCAAGGGATTCG
genomic: TTGATTCACAATGGATTGTTCATCAAGTAATTCCTTCTCTTGGGAACCAGgttagacatc ... taattttcagGGAGAGTCTGACAAAGGAAAAGGGCCAAGGGATTCG
gattttgtattaatttccaaatataattttttggatatgtatgcataattttcagGGAGAGTCTGACAAAGGAAAAGGGCCAAGGGATTCG
tattaat putative branch site (score: 2)
ttttc putative PPT
tattaatttccaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctactcatcatgacggtacatatagtctttacttcttttgcaaaagattttgtattaatttccaaatataattttttggatatgtatgcataattttcagGGAGAGTCTGACAAAGGAAAAGGGCCAAGGGATTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
ctactca
- - - -tcatgac
- - - - - - - - - - - - - - - - - -ttttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtatgca