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...ttgtaaggagctagatccaccttttctcttcacatatatagttttctactacatattcatttattttgcttcaatgtcacaaatgcatatgggcgtgtagGTTGTGGCAGCTGTTGGCTTTAAGAGAAAAAGGCTTGAGATCCCACATGATGTGAATCCCCAAGTAGCTGCGCTAATTGAGGCTTGCTGGGCCTA
species | Glycine max |
transcript | GLYMA13G21480.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GGGAGCTTGCAACATTGCAACAGCCATGGGTTAATATAAATCCAGCACAC GTTGTGGCAGCTGTCGGCTTTEST: gi|209708993|gb|BW653507.1|BW653507
genomic: GGGAGCTTGCAACATTGCAACAGCCATGGGTTAATTTAAATCCAGCACAGgtttgttgta ... gggcgtgtagGTTGTGGCAGCTGTTGGCTTT
EST: GGGAGCTTGCAACATTGCAACAGCCATGGGTTAATTTAAATCCAGCACAG GTTGTGGCAGCTGTTGGCTTTAAGAGAAAAAGGCTTGAGATCCCACATGATEST: gi|21888649|gb|BQ741862.1|BQ741862
genomic: GGGAGCTTGCAACATTGCAACAGCCATGGGTTAATTTAAATCCAGCACAGgtttgttgta ... gggcgtgtagGTTGTGGCAGCTGTTGGCTTTAAGAGAAAAAGGCTTGAGATCCCACATGAT
EST: GGGAGCTTGCAACATTGCAACAGCCATGGGTTAATTTAAATCCAGCACAG GTTGTGGCAGCTGTTGGCTTTAAGAGAAAAAGGCTTGAGATCCCACATGATEST: gi|51335181|gb|CO979047.1|CO979047
genomic: GGGAGCTTGCAACATTGCAACAGCCATGGGTTAATTTAAATCCAGCACAGgtttgttgta ... gggcgtgtagGTTGTGGCAGCTGTTGGCTTTAAGAGAAAAAGGCTTGAGATCCCACATGAT
EST: GGGAGCTTGCAACATTGCAACAGCCATGGGTTAATTTAAATCCAGCACAG GTTGTGGCAGCTGTTGGCTTTAAGAGAAAAAGGCTTGAGATCCCACATGATEST: gi|51344716|gb|CO985449.1|CO985449
genomic: GGGAGCTTGCAACATTGCAACAGCCATGGGTTAATTTAAATCCAGCACAGgtttgttgta ... gggcgtgtagGTTGTGGCAGCTGTTGGCTTTAAGAGAAAAAGGCTTGAGATCCCACATGAT
EST: GGGAGCTTGCAACATTGCAACAGCCATGGGTTAATTTAAATCCAGCACAG GTTGTGGCAGCTGTTGGCTTTAAGAGAAAAAGGCTTGAGATCCCACATGATEST: gi|254346794|gb|GR856516.1|GR856516
genomic: GGGAGCTTGCAACATTGCAACAGCCATGGGTTAATTTAAATCCAGCACAGgtttgttgta ... gggcgtgtagGTTGTGGCAGCTGTTGGCTTTAAGAGAAAAAGGCTTGAGATCCCACATGAT
EST: GGGAGCTTGCAACATTGCAACAGCCATGGGTTAATTTAAATCCAGCACAG GTTGTGGCAGCTGTTGGCTTTAAGAGAAAAAGGCTTGAGATCCCACATGATEST: gi|254314006|gb|GR831635.1|GR831635
genomic: GGGAGCTTGCAACATTGCAACAGCCATGGGTTAATTTAAATCCAGCACAGgtttgttgta ... gggcgtgtagGTTGTGGCAGCTGTTGGCTTTAAGAGAAAAAGGCTTGAGATCCCACATGAT
EST: GGGAGCTTGCAACATTGCAACAGCCATGGGTTAATTTAAATCCAGCACAG GTTGTGGCAGCTGTTGGCTTTAAGAGAAAAAGGCTTGAGATCCCACATGAT
genomic: GGGAGCTTGCAACATTGCAACAGCCATGGGTTAATTTAAATCCAGCACAGgtttgttgta ... gggcgtgtagGTTGTGGCAGCTGTTGGCTTTAAGAGAAAAAGGCTTGAGATCCCACATGAT
ctactacatattcatttattttgcttcaatgtcacaaatgcatatgggcgtgtagGTTGTGGCAGCTGTTGGCTTTAAGAGAAAAAGGCTTGAGATCCCACATGATGTGAATCCCCAAGTAGCTGCGCTAATTGAGGCTTGCTGGGCCTA
acatattcatttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtaaggagctagatccaccttttctcttcacatatatagttttctactacatattcatttattttgcttcaatgtcacaaatgcatatgggcgtgtagGTTGTGGCAGCTGTTGGCTTTAAGAGAAAAAGGCTTGAGATCCCACATGATGTGAATCCCCAAGTAGCTGCGCTAATTGAGGCTTGCTGGGCCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - ccacctt
- - - - - - - - - - - - -ctcttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatat