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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaataagggttatctctttcatgttgatcttgttagtgttacaatgattacttgtttgttttgaagtcacaaagtgttgattgctgttctgattttttggtctttttgctttttgttctcaatcaattggcttgatggaacatttaagTTCCCAAACTGCTGGTGAGTGGACAATTTATCCTTGGATTCACAGCAATTGCAATTCATTATCAGACAGTGATCAACTTCGTCCTGTTTCAATACCAGAT

Basic information

species Glycine max
transcript GLYMA13G10730.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G10730.1 (Glycine max), 3'ss of exon 13
lower sequence: LOC_Os05g43560.1 (Oryza sativa), 3'ss of exon 11
gtaagaataagggttatctctttcatgttgatcttgttagt-gttacaatgattacttgtttgttttgaagtcacaaagtgttgattgctgttctgattttttggtctttttgctttttgttctcaatcaattggcttgatggaacatttaagTTCCCAAACTGCTGGTGAGTGGACAATTTATCCTTGGATTCACAGCAATTGCAATTCATTATCAGACAGTGATCAACTTCGTCCTGTTTCAATACCAGAT
                                   ||  ||   |  ||    ||| | ||| |||| ||   | |||       | ||   |   ||| |   ||     || |  |    |   |  | ||||    |||    ||   ||  | |||    |   ||||||||| || ||||||||||| |||||||| ||||||||  | ||||||| |||||||||||| ||||||||| | || |||
-----------------------------------gtaggtcaatctaagctatacatattttttttaaaa--aaaaaac-----tagcaccttacattatcaagt-----tgttcatcacacaataatatttggtc--atgttttatc--agCACGCAAGAAACCAATGAGTGGACTATATATCCTTGGATACACAGCAACTGCAATTCTCTTTCAGACAATGATCAACTTCGCCCTGTTTCATTTCCTGAT

upper sequence: GLYMA13G10730.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv18s0041g00100.t01 (Vitis vinifera), 3'ss of exon 11
gtaagaataagggttatctctttcatgttgatcttgttagtgttacaatgattacttgtttgttttgaagtcacaaagtgttgattgct--gttctgattttttggtctttttgctttttgttctcaatcaattggcttgatggaacatttaagTTCCCAAACTGCTGGTGAGTGGACAATTTATCCTTGGATTCACAGCAATTGCAATTCATTATCAGACAGTGATCAACTTCGTCCTGTTTCAATACCAGAT
            || |   ||| ||||  || ||   |||| || | |    ||    | | | |    ||    |||  || ||| ||   | || |   |||| | |  || | |    ||||   |   ||  |||  |   |  |   ||| | ||||||||||  ||||||||||||||||||||||| |||||||||||||||||| ||||||| |  || ||||||||||||||||| || || |||
------------gtgagaactt-catggcgacctc--tagttttgccacctctatgcatatttctacctgtacacaagaatttatttctccatactcaggctttgttatccttacatgcccttctt--tgggtttacttatttttaact---agTGCTCAAACTGCTGAGGAGTGGACAATTTATCCTTGGATCCACAGCAATTGCAATTCACTATCAGAAAACGACCAACTTCGTCCTGTTTCGATTCCTGAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttggtctttttgctttttgttctcaatcaattggcttgatggaacatttaagTTCCCAAACTGCTGGTGAGTGGACAATTTATCCTTGGATTCACAGCAATTGCAATTCATTATCAGACAGTGATCAACTTCGTCCTGTTTCAATACCAGAT
                                    gcttgat  putative branch site (score: 5)
                                             aacatttaa  TA-rich tract