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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttacatgttatttgcattttgagatccgaattctacttctgttttttttttttttttaattctattttctttttaattcagGGGACAGTTTTGGACAGCCATGCTCTTATTTTACAACCTTGTAATGTCAAGAATGATGGGCAAAAACAAAAGACACTTGAGAAGGATAGGAGTTCAACAA

Basic information

species Glycine max
transcript GLYMA13G09970.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192306711|gb|FG998865.1|FG998865
EST:     TTGAGTTTGACTCCCCTGAAACTGCTACAAATGTTTGCAAAGATTTACAG                         GGGACAGTTTTGGACAGCCATGCTCTTATTTTACAACCTTGTAATGTCAAG
genomic: TTGAGTTTGACTCCCCTGAAACTGCTACAAATGTTTGCAAAGATTTACAGgtatttacat ... tttaattcagGGGACAGTTTTGGACAGCCATGCTCTTATTTTACAACCTTGTAATGTCAAG
EST: gi|51334771|gb|CO978637.1|CO978637
EST:     TTGAGTTTGACTCCCCTGAAACTGCTACAAATGTTTGCAAAGATTTACAG                         GGGACAGTTTTGGACAGCCATGCTCTTATTTTACAACCTTGTAATGTCAAG
genomic: TTGAGTTTGACTCCCCTGAAACTGCTACAAATGTTTGCAAAGATTTACAGgtatttacat ... tttaattcagGGGACAGTTTTGGACAGCCATGCTCTTATTTTACAACCTTGTAATGTCAAG
EST: gi|254313855|gb|GR831484.1|GR831484
EST:     TTGAGTTTGACT-CCCTGAAACTGCTACAAATGTTTGCAAAGATTTACAG                         GGGACAGTTTTGGACAGCCATGCTCTTATTTTACAACCTTGTAATGTCAAG
genomic: TTGAGTTTGACTCCCCTGAAACTGCTACAAATGTTTGCAAAGATTTACAGgtatttacat ... tttaattcagGGGACAGTTTTGGACAGCCATGCTCTTATTTTACAACCTTGTAATGTCAAG
EST: gi|16348200|gb|BI973795.1|BI973795
EST:     TTGAGTTTGACTCCCCTGAAACTGCTACAAATGTTTGCAAAGATTTACAG                         GGGACAGTTTTGGACAGCCATGCTCTTATTTTACAACCTTGTAATGTCAAG
genomic: TTGAGTTTGACTCCCCTGAAACTGCTACAAATGTTTGCAAAGATTTACAGgtatttacat ... tttaattcagGGGACAGTTTTGGACAGCCATGCTCTTATTTTACAACCTTGTAATGTCAAG
EST: gi|193586810|gb|FK541342.1|FK541342
EST:     GTTTGCAAAGATTTACAG                         GGGACAGTTTTGGACAGCCATGCTCTTATTTTACAACCTTGTAATGTCAAG
genomic: GTTTGCAAAGATTTACAGgtatttacat ... tttaattcagGGGACAGTTTTGGACAGCCATGCTCTTATTTTACAACCTTGTAATGTCAAG
EST: gi|15287874|gb|BI471765.1|BI471765
EST:     TTGAGTTTGACTCCCCTGAAACTGCTACAAATGTTTGCAAAGATTTACAG                         GGGACAGTTTTGGACAGCCATGCTCTTATTTTACAACCTTGTAATGTCAAG
genomic: TTGAGTTTGACTCCCCTGAAACTGCTACAAATGTTTGCAAAGATTTACAGgtatttacat ... tttaattcagGGGACAGTTTTGGACAGCCATGCTCTTATTTTACAACCTTGTAATGTCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgaattctacttctgttttttttttttttttaattctattttctttttaattcagGGGACAGTTTTGGACAGCCATGCTCTTATTTTACAACCTTGTAATGTCAAGAATGATGGGCAAAAACAAAAGACACTTGAGAAGGATAGGAGTTCAACAA
                                            ttttaat  putative branch site (score: 3)
         cttctgtttttttttt  CT-rich tract
             tgtttttttttttttt  TA-rich tract