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...tgatttatgctacattaagcttttattgcaatactggtttatattggttgcctaaatatgatgttgacaatgaaactgattatttttttggtgttatcagATCTCCAACTTCGTCATCGGCCTCTACTTCTTGAGTGTTGTAAACAAGTTTGGTATCAGCTCCGTGTACTTGGGATTCTCGGCTGTCTGTGTTCTTGCTG
species | Glycine max |
transcript | GLYMA13G07780.2 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: AGCAGTTTCTTTGTCATTAGGCACACATTGG ATCTCCAACTTCGTCATCGGCCTCTACTTCTTGAGTGTTGTAAACAAGTTTEST: gi|208135856|gb|GD936701.1|GD936701
genomic: AGCAGTTTCTTTGTCATTAGGCACACATTGGgtgagtgact ... gtgttatcagATCTCCAACTTCGTCATCGGCCTCTACTTCTTGAGTGTTGTAAACAAGTTT
EST: CTTCTAGAATTAGAGCAAAAGCAGTTTCTTTGTCATTAGGCACACATTGG ATCTCCAACTTCGTCATCGGCCTCTACTTCTTGAGTGTTGTAAACAAGTTTEST: gi|51335113|gb|CO978979.1|CO978979
genomic: CTTCTAGAATTAGAGCAAAAGCAGTTTCTTTGTCATTAGGCACACATTGGgtgagtgact ... gtgttatcagATCTCCAACTTCGTCATCGGCCTCTACTTCTTGAGTGTTGTAAACAAGTTT
EST: CTTCTAGAATTAGAGCAAAAGCAGTTTCTTTGTCATTAGGCACACATTGG ATCTCCAACTTCGTCATCGGCCTCTACTTCTTGAGTGTTGTAAACAAGTTTEST: gi|15664634|gb|BI702005.1|BI702005
genomic: CTTCTAGAATTAGAGCAAAAGCAGTTTCTTTGTCATTAGGCACACATTGGgtgagtgact ... gtgttatcagATCTCCAACTTCGTCATCGGCCTCTACTTCTTGAGTGTTGTAAACAAGTTT
EST: CTTCTAGAATTAGAGCAAAAGCAGTTTCTTTGTCATTAGGCACACATTGG ATCTCCAACTTCGTCATCGGCCTCTACTTCTTGAGTGTTGTAAACAAGTTTEST: gi|22930424|gb|BU547563.1|BU547563
genomic: CTTCTAGAATTAGAGCAAAAGCAGTTTCTTTGTCATTAGGCACACATTGGgtgagtgact ... gtgttatcagATCTCCAACTTCGTCATCGGCCTCTACTTCTTGAGTGTTGTAAACAAGTTT
EST: CTTCTAGAATTAGAGCAAAAGCAGTTTCTTTGTCATTAGGCACACATTGG ATCTCCAACTTCGTCATCGGCCTCTACTTCTTGAGTGTTGTAAACAAGTTTEST: gi|214010108|gb|DB989480.1|DB989480
genomic: CTTCTAGAATTAGAGCAAAAGCAGTTTCTTTGTCATTAGGCACACATTGGgtgagtgact ... gtgttatcagATCTCCAACTTCGTCATCGGCCTCTACTTCTTGAGTGTTGTAAACAAGTTT
EST: TTGTCATTAGGCACACATTGG ATCTCCAACTTCGTCATCGGCCTCTACTTCTTGAGTGTTGTAAACAAGTTT
genomic: TTGTCATTAGGCACACATTGGgtgagtgact ... gtgttatcagATCTCCAACTTCGTCATCGGCCTCTACTTCTTGAGTGTTGTAAACAAGTTT
ggttgcctaaatatgatgttgacaatgaaactgattatttttttggtgttatcagATCTCCAACTTCGTCATCGGCCTCTACTTCTTGAGTGTTGTAAACAAGTTTGGTATCAGCTCCGTGTACTTGGGATTCTCGGCTGTCTGTGTTCTTGCTG
aactgat putative branch site (score: 3)
aatgaaactgattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatttatgctacattaagcttttattgcaatactggtttatattggttgcctaaatatgatgttgacaatgaaactgattatttttttggtgttatcagATCTCCAACTTCGTCATCGGCCTCTACTTCTTGAGTGTTGTAAACAAGTTTGGTATCAGCTCCGTGTACTTGGGATTCTCGGCTGTCTGTGTTCTTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC