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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggttgtttctcctctgacagtaattgaaccatgtttcatacactcaatagcaatctaacaagcattcaaattgcaaccaatcttgttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGGAGTGAGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAA

Basic information

species Glycine max
transcript GLYMA12G34330.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G34330.1 (Glycine max), 3'ss of exon 13
lower sequence: AT5G54670.1 (Arabidopsis thaliana), 3'ss of exon 14
gtatggttgtttctcctctgacagtaattgaaccatgtttcatac-actcaatagcaatctaacaagc--attcaaattgcaaccaatcttgttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGGAGTGAGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAA
                      | |||   |||| | |||| |   ||  |||     | |     |   |  |||| ||   |   | |  ||||   |||||||||| ||||||| ||||||| |  | || || ||||||||||| |||||||||||| | || | ||| || ||||| || ||  || | |||||||
--------------------gtactaaccaaaccgtctttcttcttacagaatgtttgttttgtgtgataaaccaaactg--gcttttttctttcttacagAGCACTGAGCAACAAGTACAAGGTGTCTTGAACCTGATTGATCTTGCGGGGAGTGAGCGTTTATCGAAGAGTGGATCAACCGGAGATAGACTTAAAGAAA

upper sequence: GLYMA12G34330.1 (Glycine max), 3'ss of exon 13
lower sequence: AT4G27180.1 (Arabidopsis thaliana), 3'ss of exon 14
gtatggttgtttctcctctgacagtaattgaaccatgtttcatacactcaatagcaatctaacaagcattcaaattgcaaccaatcttgttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGGAGTGAGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAA
   |  |  |      ||| || | ||   ||| |  ||| |||    |  |     | |       |   | | ||      ||||| |  |   ||||||| || ||||||| ||||||| |  | || || ||||||||||| || ||||||||| | |||| |||||| |||||||| ||  || |||||||||
--gtactaatcgggtttcttactgcaac--aacaacatttgata-gtccgctgtttgtttctgctaaaccaacactggggtttatcttttatttacagAGCACAGAGCAACAAGTACAAGGTGTCTTGAACCTGATTGATCTTGCGGGTAGTGAGCGTTTGTCAAAGAGCGGATCAACTGGCGATAGACTGAAAGAAA

upper sequence: GLYMA12G34330.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv19s0014g05070.t01 (Vitis vinifera), 3'ss of exon 13
gtatggttgtttctcctctgacagtaattgaaccatgtttcatacactcaatagcaatctaacaa-gcattcaaattgcaaccaatcttgttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGGAGTGAGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAA
||||    || |      || |     |      |  ||  || | ||  ||     | ||||   |  |||   |||      |  |   |   | |||||||||| ||||||| ||||||| || | || || ||||||||||| || ||||| || ||||| | ||| || ||||| |||||||| ||||||||||
gtataaa-gtcttcatggtgccctctgtgctgatacattg-atgctcttgattatgttttaactctgttttctctttgtttttcacttatattgaccagAGCACTGAACAACAAGTACAAGGTGTTTTGAACCTTATTGATCTTGCGGGCAGTGAACGACTTTCTAAGAGTGGATCAACAGGGGACCGTTTGAAAGAAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193396363|gb|FK362761.1|FK362761
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGT
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGT
EST: gi|208301565|gb|GE100321.1|GE100321
EST:     TGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
genomic: TGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
EST: gi|208092330|gb|GD888933.1|GD888933
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
EST: gi|208151533|gb|GD950402.1|GD950402
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
EST: gi|193393015|gb|FK360225.1|FK360225
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAA
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAA
EST: gi|208304375|gb|GE104792.1|GE104792
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
EST: gi|207777173|gb|GD748268.1|GD748268
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTNTTCT
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCT
EST: gi|193703461|gb|FK640089.1|FK640089
EST:     TTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
genomic: TTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
EST: gi|208038614|gb|GD833310.1|GD833310
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCT
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCT
EST: gi|207845067|gb|GD815350.1|GD815350
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAA
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAA
EST: gi|193573368|gb|FK530105.1|FK530105
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAA-TGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGA
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGA
EST: gi|208026158|gb|GD825704.1|GD825704
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
EST: gi|208242338|gb|GE042414.1|GE042414
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
EST: gi|193425309|gb|FK387826.1|FK387826
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAA
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAA
EST: gi|208143954|gb|GD941571.1|GD941571
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
EST: gi|193544381|gb|FK501194.1|FK501194
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAA
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAA
EST: gi|207825869|gb|GD797384.1|GD797384
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
EST: gi|193390545|gb|FK355009.1|FK355009
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
EST: gi|193682015|gb|FK624947.1|FK624947
EST:     CGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
genomic: CGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
EST: gi|208162187|gb|GD965298.1|GD965298
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAATGTATT
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATT
EST: gi|208160909|gb|GD965547.1|GD965547
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAA
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAA
EST: gi|208301052|gb|GE098535.1|GE098535
EST:     TTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
genomic: TTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
EST: gi|208248343|gb|GE047074.1|GE047074
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
EST: gi|193527063|gb|FK485457.1|FK485457
EST:     GTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCTACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGG
genomic: GTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGC-ACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGG
EST: gi|207842328|gb|GD814166.1|GD814166
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
EST: gi|208244998|gb|GE038983.1|GE038983
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
EST: gi|193362738|gb|FK327858.1|FK327858
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAANA-GCACAAGGTATTCTAAA
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAA
EST: gi|193336412|gb|FK298144.1|FK298144
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
EST: gi|193322526|gb|FK289448.1|FK289448
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAATCTCA
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAATCTCA
EST: gi|208339126|gb|GE138874.1|GE138874
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAA
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAA
EST: gi|193634846|gb|FK585265.1|FK585265
EST:     CTTCTAGAAGTCA-TTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
EST: gi|193407546|gb|FK370290.1|FK370290
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
EST: gi|193727526|gb|FK664128.1|FK664128
EST:     CTTCTAGAAGTCATTCTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCAACAAG
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCA-CAAG
EST: gi|193362942|gb|FK327488.1|FK327488
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACA-GCACAAGGTATTCTAAA
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAA
EST: gi|208305002|gb|GE101877.1|GE101877
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAAT
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAAT
EST: gi|208274058|gb|GE071050.1|GE071050
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAA
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAA
EST: gi|193653661|gb|FK594339.1|FK594339
EST:     CTTCTAGAAGTCACTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAA
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAA
EST: gi|208163041|gb|GD965677.1|GD965677
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAA
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAA
EST: gi|208257918|gb|GE050949.1|GE050949
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAA
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAA
EST: gi|207680282|gb|GD661754.1|GD661754
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
EST: gi|193391613|gb|FK354174.1|FK354174
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACGAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
EST: gi|193619875|gb|FK567140.1|FK567140
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
EST: gi|193361005|gb|FK323857.1|FK323857
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACGAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
EST: gi|207758064|gb|GD729230.1|GD729230
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAACTGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAAT
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAAT
EST: gi|193516215|gb|FK473897.1|FK473897
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAA
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAA
EST: gi|193527386|gb|FK487600.1|FK487600
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
EST: gi|207844076|gb|GD816081.1|GD816081
EST:     CTTCTAGAAGTCATTTTGTATTCACNCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
EST: gi|208151123|gb|GD946072.1|GD946072
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
EST: gi|193684738|gb|FK622290.1|FK622290
EST:     CGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
genomic: CGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
EST: gi|207824692|gb|GD794262.1|GD794262
EST:     TTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
genomic: TTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
EST: gi|193608834|gb|FK563378.1|FK563378
EST:     C-TCTAGAAGTCA-TTTGTA-TCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
EST: gi|193644630|gb|FK589102.1|FK589102
EST:     CTTCTAGAAGTCATTTTGTACTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAA
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAA
EST: gi|193396509|gb|FK363691.1|FK363691
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAA
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAA
EST: gi|193339800|gb|FK303187.1|FK303187
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAA
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAA
EST: gi|193401661|gb|FK366334.1|FK366334
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAAT
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAAT
EST: gi|208131508|gb|GD932045.1|GD932045
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGG
EST: gi|193314386|gb|FK280145.1|FK280145
EST:     CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAG                         AGCACTGACCAACAAGCACAAGGTATTCTAAAT
genomic: CTTCTAGAAGTCATTTTGTATTCACTCTTCGATTATATGGTGTAAATGAGgtatggttgt ... gttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acactcaatagcaatctaacaagcattcaaattgcaaccaatcttgttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGGAGTGAGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAA
             atctaac  putative branch site (score: 2)
                                         tcttgttct  putative PPT
                        attcaaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatggttgtttctcctctgacagtaattgaaccatgtttcatacactcaatagcaatctaacaagcattcaaattgcaaccaatcttgttctgctagAGCACTGACCAACAAGCACAAGGTATTCTAAATCTCATTGATCTTGCTGGGAGTGAGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA