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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtaatctggttaaagacctttgctattttaacatatagttcattctattaacttatcatttgttgcagGCCCATCCTAGTTCTCCCTCCAGCTGATATGCAGGTAATTTACTGTGAACCCACAGAACCTGAAAAGGACTTTTATGGAGCCCTATTCAAAAGATCTAAG

Basic information

species Glycine max
transcript GLYMA12G30540.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G30540.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv06s0061g01190.t01 (Vitis vinifera), 3'ss of exon 12
-----------------------------gtcagtaatctggttaaagacctttgctattttaacatatagttcattctattaacttatcatttgttgcagGCCCATCCTAGTTCTCCCTCCAGCTGATATGCAGGTAATTTACTGTGAACCCACAGAACCTGAAAAGGACTTTTATGGAGCCCTATTCAAAAGATCTAAG
                              | |    | |  ||       |||    ||||   || |  |    ||  ||  ||  |   ||||  |||||| || |||||||||||||||||||| || || || ||||| |||||||  ||   | ||||||| ||||||||||  || ||||| |||||||| |||
gtgagtaagctagctgaggacattatcccattacattttttttttcttttttttttctttttttaatgttttctgatccttttgctctttcgttgtcccagGCCAATTCTAGTTCTCCCTCCAGCTGACATTCAAGTGATTTATTGTGAACTTACTTCAGCTGAAAAAGACTTTTATGAGGCTCTATTTAAAAGATCCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agacctttgctattttaacatatagttcattctattaacttatcatttgttgcagGCCCATCCTAGTTCTCCCTCCAGCTGATATGCAGGTAATTTACTGTGAACCCACAGAACCTGAAAAGGACTTTTATGGAGCCCTATTCAAAAGATCTAAG
                                tattaac  putative branch site (score: 1)
          tattttaacatatagt  TA-rich tract