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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggcatgggttggtttcacctctctttcaagaatgctttgttttagtttcttgactaattttccagattctccaacacttcaatctacagggactctttttttttttttttaacttgcagTGCTCTTGTTCAGTTCTGGTGTAGCTATATGACAGTGCCCCTGAATGTAATAGTTTCACAG

Basic information

species Glycine max
transcript GLYMA12G29080.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G29080.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv12s0035g00260.t01 (Vitis vinifera), 3'ss of exon 13
gttggcatgggttggtttcacctctctttcaagaatgctttgttttagtttcttgactaattttccagattctccaacacttcaatctacagggac-tctttttttttttttttaacttgcagTGCTCTTGTTCAGTTCTGGTGTAGCTATATGACAGTGCCCCTGAATGTAATAGTTTCACAG
                     || |  |  | |||| | |||    | |  | ||   |||  |  | ||||   |   |   |||  | |    | ||||   || |  |    || ||||| | |||||||||||||||||||||||||   || ||||| ||||| |||||  |  |||||
---------------------ctatgctagatgaattcattgaaaca-taacatg-tgaatgctgtaaattcatgactccactaatgaaaacaagcatcttgacttctcatgggtacatgcagGGTTCTTGTTCAGTTCTGGTGTAGCTATTGCACTGTGCCTCTGAACGTAATTATCACACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattctccaacacttcaatctacagggactctttttttttttttttaacttgcagTGCTCTTGTTCAGTTCTGGTGTAGCTATATGACAGTGCCCCTGAATGTAATAGTTTCACAG
                                          ttttaac  putative branch site (score: 2)
                            ctcttttttttttttt  CT-rich tract
                           actctttttttttttt  TA-rich tract