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...acctaattgttttgcaggttcaggtaaatataactatgttttgattatactatagtctaagtattaataagggttttgtgatttgtcctttgcgttgcagGCGCCATCAGACTCCCCAGGAGATAATAGAGCTAAA
species | Glycine max |
transcript | GLYMA12G28620.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ACATAGTTCATCTGGGTCTGCCTACTCTTGGGGGCTCAAATGGCAATGAG GCGCCATCAGACTCCCCAGGAGATAATAGAGCTAAAEST: gi|254338260|gb|GR849785.1|GR849785
genomic: ACATAGTTCATCTGGGTCTGCCTACTCTTGGGGGCTCAAATGGCAATGAGgcaagtgatt ... tgcgttgcagGCGCCATCAGACTCCCCAGGAGATAATAGAGCTAAA
EST: ACATAGTTCATCTGGGTCTGCCTACTCTTGGGGGCTCAAATGGCAATGAG GCGCCATCAGACTCCCCAGGAGATAATAGAGCTAAA
genomic: ACATAGTTCATCTGGGTCTGCCTACTCTTGGGGGCTCAAATGGCAATGAGgcaagtgatt ... tgcgttgcagGCGCCATCAGACTCCCCAGGAGATAATAGAGCTAAA
tatactatagtctaagtattaataagggttttgtgatttgtcctttgcgttgcagGCGCCATCAGACTCCCCAGGAGATAATAGAGCTAAA
tattaat putative branch site (score: 2)
tttgtccttt putative PPT
tctaagtattaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acctaattgttttgcaggttcaggtaaatataactatgttttgattatactatagtctaagtattaataagggttttgtgatttgtcctttgcgttgcagGCGCCATCAGACTCCCCAGGAGATAATAGAGCTAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - -tgttttg
- - - - - - tgcaggt
- - - - - - - - - - - - -aaatataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggttttg