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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttgcaagtgtttagttactgctttttatgttaaagtgaattttctgatggacaatttctaaattgcagTGGCCAAGGTAAAACCCTGAGAAGTTCTGGATGGGACTTCAGCATTGGTGGATCACAGGGTACTGGAACCTTTCGTAGTGTGTCACGGCCACCTCAGTTT

Basic information

species Glycine max
transcript GLYMA12G27300.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G27300.2 (Glycine max), 3'ss of exon 13
lower sequence: Vv19s0014g02310.t01 (Vitis vinifera), 3'ss of exon 13
gtaggttgcaagtgtttagttactgcttt--ttatgttaaagtgaattttctgatggacaatttctaaattgcagTGGCCAAGGTAAAACCCTGAGAAGTTCTGGATGGGACTTCAGCATTGGTGGATCACAGGGTACTGGAACCTTTCGTAGTGTGTCACGGCCACCTCAGTTT
|| ||||  |  ||   |  || ||||||  | || | | |||   |||| |||   |  |  || ||  | |||| | || || ||||||||||||| | |||||||||| |||||| || |||| |||||| |||| |||||| |||| |||||   | | |||||||||  |
gtgggtt-tatctg---aactaatgctttactcatttcatagttggtttt-tgactaattaggtcaaatatacagTAGTCAGGGAAAAACCCTGAGAAATGCTGGATGGGATTTCAGCCTTAGTGGCTCACAGAGTACAGGAACCGTTCGAAGTGTCATAAGACCACCTCAGGCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14999549|gb|BI320429.1|BI320429
EST:     ACTATTAAGGTTGCAAAAGATTTAAGGGGTGACGAAACTAATCAGCCTAG                         TGGCCAAGGTAAAACCCTGAGAAGTTCTGGATGGGACTTCAGCATTGGTGG
genomic: ACTATTAAGGTTGCAAAAGATTTAAGGGGTGACGAAACTAATCAGCCTAGgtaggttgca ... taaattgcagTGGCCAAGGTAAAACCCTGAGAAGTTCTGGATGGGACTTCAGCATTGGTGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttactgctttttatgttaaagtgaattttctgatggacaatttctaaattgcagTGGCCAAGGTAAAACCCTGAGAAGTTCTGGATGGGACTTCAGCATTGGTGGATCACAGGGTACTGGAACCTTTCGTAGTGTGTCACGGCCACCTCAGTTT
                                          ttctaaa  putative branch site (score: 2)
                                         tttct  CT-rich tract
        tttttatgttaaagtg  TA-rich tract