1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...atggaacaaaatattgatttattttctctaagtagtcacaaaactttttatttccaacttaactgtattgatttctttctttctgtttacctccttttagATCTGTGGGTAAAACCCAGATGAATGAACAATCATCAAGAAGTCATTTTGTATTCACTCTTCGAATATACGGTGTAAATGAG
species | Glycine max |
transcript | GLYMA12G16580.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CATAGTGCTAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG ATCTGTGGGTAAAACCCAGATGAATGAACAATCATCAAGAAGTCATTTTGTEST: gi|18733417|gb|BM527595.1|BM527595
genomic: CATAGTGCTAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaactaatt ... ctccttttagATCTGTGGGTAAAACCCAGATGAATGAACAATCATCAAGAAGTCATTTTGT
EST: CATAGTGCTAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG ATCTGTGGGTAAAACCCAGATGAATGAACAATCATCAAGAAGTCATTTTGTEST: gi|12688191|gb|BG154527.1|BG154527
genomic: CATAGTGCTAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaactaatt ... ctccttttagATCTGTGGGTAAAACCCAGATGAATGAACAATCATCAAGAAGTCATTTTGT
EST: AGCTGCTAACAGAGGTTGCATTTTCTTTTAAATCAAGCTGCAAATAGCAG ATCTGTGGGTAAAACCCAGATGAATGAACAATCATCAAGAAGTCATTTTGT
genomic: AG-TGCTAA-AGAGGTTGCA-TTTCTTTTAAATCAAGCTGCAAATAGCAGgtaactaatt ... ctccttttagATCTGTGGGTAAAACCCAGATGAATGAACAATCATCAAGAAGTCATTTTGT
ttttatttccaacttaactgtattgatttctttctttctgtttacctccttttagATCTGTGGGTAAAACCCAGATGAATGAACAATCATCAAGAAGTCATTTTGTATTCACTCTTCGAATATACGGTGTAAATGAG
tattgat putative branch site (score: 3)
ttgatttctttctttc CT-rich tract
tattgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atggaacaaaatattgatttattttctctaagtagtcacaaaactttttatttccaacttaactgtattgatttctttctttctgtttacctccttttagATCTGTGGGTAAAACCCAGATGAATGAACAATCATCAAGAAGTCATTTTGTATTCACTCTTCGAATATACGGTGTAAATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - aacaaaa
- - - - - - - - - - - - - - - - - - - caaaact
- - - - - - - - - - - - - - - - - - - - - - - - - - tccaact