1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...caaacatgcactacacgtataactcaacaatcaattttggcttgattcattcattcagagttcagacacgtgagatgcatatttatgttgtcattttcagATGGGGACTGTTTTACTAGTGAAACACGTCCAAGAAAGCATTGAAGTGAGCAACAAGTTTGTGGTTGGAGGTTGCAAATATCAGTTTGCTTATGGTGGTT
species | Glycine max |
transcript | GLYMA12G10280.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TTTAGATTCCTCTTCACTCAATTATTCTTCAGCTCAGGAATCAAGAAACG ATGGGGACTGTTTTACTAGTGAAACACGTCCAAGAAAGCATTGAAGTGAGCEST: gi|51338274|gb|CO982140.1|CO982140
genomic: TTTAGATTCCTCTTCACTCAATTATTCTTCAGCTCAGGAATCAAGAAACGgtatgtgcac ... tcattttcagATGGGGACTGTTTTACTAGTGAAACACGTCCAAGAAAGCATTGAAGTGAGC
EST: TTTAGATTCCTCTTCACTCAATTATTCTTCAGCTCAGGAATCAAGAAACG ATGGGGACTGTTTTACTAGTGAAACACGTCCAAGAAAGCATTGAAGTGAGC
genomic: TTTAGATTCCTCTTCACTCAATTATTCTTCAGCTCAGGAATCAAGAAACGgtatgtgcac ... tcattttcagATGGGGACTGTTTTACTAGTGAAACACGTCCAAGAAAGCATTGAAGTGAGC
ttcattcattcagagttcagacacgtgagatgcatatttatgttgtcattttcagATGGGGACTGTTTTACTAGTGAAACACGTCCAAGAAAGCATTGAAGTGAGCAACAAGTTTGTGGTTGGAGGTTGCAAATATCAGTTTGCTTATGGTGGTT
tcattttc CT-rich tract
atatttatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaacatgcactacacgtataactcaacaatcaattttggcttgattcattcattcagagttcagacacgtgagatgcatatttatgttgtcattttcagATGGGGACTGTTTTACTAGTGAAACACGTCCAAGAAAGCATTGAAGTGAGCAACAAGTTTGTGGTTGGAGGTTGCAAATATCAGTTTGCTTATGGTGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - catgcac
- - - - - - - - - - - ctcaaca
- - - - - - - - - - - - - - - - - - -tggcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatat