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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattctctctaaactccttgacatccatttcattctttaaatatatcatgcactctatctcacacacacaaggagggaggggtttggaagtgtcatttttttttaatttttttaaaaaaaataggaatctaggcttgatgttcttaaacttccttgttacatttacagCTGGAGTTGAATGGAATGAACTGGAACCACTTCAAGAAGATTATTGTATGACTGACGAGAACACTACAACGCCAAGTCATCCTTCAAATGTAGGTGAAGT

Basic information

species Glycine max
transcript GLYMA12G09860.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13791357|gb|BG653948.1|BG653948
EST:     GCTTTTATCAGATGCTGATGTTAGCATAACTGACATGTGGAGAACAGAAC                         CTGGAGTTGAATGGAATGAACTGGA
genomic: GCTTTTATCAGATGCTGATGTTAGCATAACTGACATGTGGAGAACAGAACgtattctctc ... acatttacagCTGGAGTTGAATGGAATGAACTGGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaaaaataggaatctaggcttgatgttcttaaacttccttgttacatttacagCTGGAGTTGAATGGAATGAACTGGAACCACTTCAAGAAGATTATTGTATGACTGACGAGAACACTACAACGCCAAGTCATCCTTCAAATGTAGGTGAAGT
                   gcttgat  putative branch site (score: 5)
                                           ttacattta  TA-rich tract