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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgctcgcttttcttctaacttctcccagcagttactttttgctttcctttgagtagaatgttgtaacttaatcttcatgatgcttttagGTACCAGTTTGTGCCCCAGATGATTTTCCTTAACTGTCTATTTGGGTATCTTTCCCTTCTCATCGTTGTCAAGTGGTGTACTGGCTCTCAGGCAGACCTT

Basic information

species Glycine max
transcript GLYMA12G07740.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G07740.1 (Glycine max), 3'ss of exon 13
lower sequence: EDP04117 (Chlamydomonas reinhardtii), 3'ss of exon 17
-------gtgctcgcttttcttctaacttctcccagcagttactttttgctttcctttgagtagaatgttgta---acttaatcttcatgatgcttttagGTACC------------------AGTTTGTGCCCCAGATGATTTTCCTTAACTGTCTATTTGGGTATCTTTCCCTTCTCATCGTTGTCAAGTGGTGTACTGGCTCTCAGGCAGACCTT
          | | ||     ||   |  ||||| ||| | |||| ||  | | | || | |  |||  || |   |  |      |      |    ||| |||                  ||||||||||||||||||||||||| ||| | || ||||| || || ||    |||||||| | |||||||   ||                   
cgcgacacctcccactcacgctccgccccctccccgcattcacttcttattcttccttcaattaaataatgcatatatctcccgccccgcccacccgcagGGACCGGCTGTCCACCATCTGCGAGTTTGTGCCCCAGATGATTTTCCTGAACAGCCTGTTTGGCTACCTGTCGGCGCTCATCGTGGGCAAGTGGCTCACC------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254315253|gb|GR830246.1|GR830246
EST:     CTTTTAAGTTATTTCAATGCTCGTTTCTTTGGCAATTCGCTGGATATAAG                         GTACCAGTTTGTGCCCCAGATGATTTTCCTTAACTGTCTATTTGGGTATCT
genomic: CTTTTAAGTTATTTCAATGCTCGTTTCTTTGGCAATTCGCTGGATATAAGgtgctcgctt ... atgcttttagGTACCAGTTTGTGCCCCAGATGATTTTCCTTAACTGTCTATTTGGGTATCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttttgctttcctttgagtagaatgttgtaacttaatcttcatgatgcttttagGTACCAGTTTGTGCCCCAGATGATTTTCCTTAACTGTCTATTTGGGTATCTTTCCCTTCTCATCGTTGTCAAGTGGTGTACTGGCTCTCAGGCAGACCTT
                                              tgctttt  CT-rich tract
                             taacttaat  TA-rich tract