1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...gctataataggaaaaatgattttgctgctaactaatggtaatacatgttgcattagacaatccagttgcaattgacttcacggggatgggaaaaggtgagGCTTGGGTGAATGGACAGTGCATTGGACGGTACTGGCCTACATATGTTTCTCCTAATGGTGGTTGTACCGACTCATGCAATTATAGAGGGGCCTATAGTT
species | Glycine max |
transcript | GLYMA12G07380.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
tgttgcattagacaatccagttgcaattgacttcacggggatgggaaaaggtgagGCTTGGGTGAATGGACAGTGCATTGGACGGTACTGGCCTACATATGTTTCTCCTAATGGTGGTTGTACCGACTCATGCAATTATAGAGGGGCCTATAGTT
aattgac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctataataggaaaaatgattttgctgctaactaatggtaatacatgttgcattagacaatccagttgcaattgacttcacggggatgggaaaaggtgagGCTTGGGTGAATGGACAGTGCATTGGACGGTACTGGCCTACATATGTTTCTCCTAATGGTGGTTGTACCGACTCATGCAATTATAGAGGGGCCTATAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - gaaaaat
- - - - - - - - - - -ttgctgc
- - - - - - - - - - - - - - - -ctaatgg
- - - - - - - - - - - - - - - - - - - - -tacatgt
- - - - - - - - - - - - - - - - - - - - - - - - tgcatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acttcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggatggg