1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtaagttctctgtattttattttcttgcttttcattggttaaggtcttatggacatattgcatgtttttaatgtgaatgcagGAGCCTTCAGAAGAGGCTTTTGACATTGATTCAGTGCCCAGGGAGGTCAAGTCTCAACCACTTGCAGAGAAGAAAGCCCCTGGTAAAAAGCCTACTGGTT
species | Glycine max |
transcript | GLYMA12G04820.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GGTCATTTGTTATCCCGCTTGTCAATCTGGAGACTAGTTTGAAAAACTAC GAGCCTTCAGAAGAGGCTTTTGACATTGATTCAGTGCCCAGGGAGGTCAAGEST: gi|298193333|gb|HO033767.1|HO033767
genomic: GGTCATTTGTTATCCCGCTTGTCAATCTGGAGACTAGTTTGAAAAACTACgtaagttctc ... gtgaatgcagGAGCCTTCAGAAGAGGCTTTTGACATTGATTCAGTGCCCAGGGAGGTCAAG
EST: GGTCATTTGTTATCCCGCTTGTCAATCTGGAGACTAGTTTGAAAAACTAC GAGCCTTCAGAAGAGGCTTTTGACATTGATTCAGTGCCCAGGGAGGTCAAGEST: gi|193466600|gb|FK433057.1|FK433057
genomic: GGTCATTTGTTATCCCGCTTGTCAATCTGGAGACTAGTTTGAAAAACTACgtaagttctc ... gtgaatgcagGAGCCTTCAGAAGAGGCTTTTGACATTGATTCAGTGCCCAGGGAGGTCAAG
EST: GGTCATTTGTTATCCCGCTTGTCAATCTGGAGACTAGTTTGAAAAACTAC GAGCCTTCAGAAGAGGCTTTTGACATTGATTCAGTGCCCAGGGAGGTCAAGEST: gi|33390701|gb|CA853896.1|CA853896
genomic: GGTCATTTGTTATCCCGCTTGTCAATCTGGAGACTAGTTTGAAAAACTACgtaagttctc ... gtgaatgcagGAGCCTTCAGAAGAGGCTTTTGACATTGATTCAGTGCCCAGGGAGGTCAAG
EST: ATCCCGCTTGTCAATCTGGAGACTAGTTTGAAAAACTAC GAGCCTTCAGAAGAGGCTTTTGACATTGATTCAGTGCCCAGGGAGGTCAAG
genomic: ATCCCGCTTGTCAATCTGGAGACTAGTTTGAAAAACTACgtaagttctc ... gtgaatgcagGAGCCTTCAGAAGAGGCTTTTGACATTGATTCAGTGCCCAGGGAGGTCAAG
cttttcattggttaaggtcttatggacatattgcatgtttttaatgtgaatgcagGAGCCTTCAGAAGAGGCTTTTGACATTGATTCAGTGCCCAGGGAGGTCAAGTCTCAACCACTTGCAGAGAAGAAAGCCCCTGGTAAAAAGCCTACTGGTT
ttttaat putative branch site (score: 3)
tttttaatgtgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttctctgtattttattttcttgcttttcattggttaaggtcttatggacatattgcatgtttttaatgtgaatgcagGAGCCTTCAGAAGAGGCTTTTGACATTGATTCAGTGCCCAGGGAGGTCAAGTCTCAACCACTTGCAGAGAAGAAAGCCCCTGGTAAAAAGCCTACTGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA