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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcttttttatacaaaagtattactgctgcttacaacaatcttttagatgttaccatggataatgtagttataattttttttctcctatctgcagACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAGAGCCCTGCCATAGTTAAT

Basic information

species Glycine max
transcript GLYMA12G03640.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G03640.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv04s0023g03830.t01 (Vitis vinifera), 3'ss of exon 13
---------------gtattct-tttttatacaaaagtattactgctgcttacaac--aatcttttagatgttaccatggataatgtagttataatttttttt-------------ctcctatc--tgcagACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAGAGCCCTGCCATAGTTAAT
                |||| | ||| | || |||   || |  | |   || |    | | || ||||    | ||| |  ||   |  ||| || ||||||               || ||   || |||  |||||||| | |||||| ||||| ||||| ||||| || ||||||||||||||||| ||  | |||
gtaatttcattttctatattttatttctgtagaaacaaatcatggttttctatattttattgttgtagaacaaatcattgtgaaaacatatatcatgttttttaaattatgtaacttccccattgttgaagATGGAGACACTTGTTGATCACATAAAGTTTGATCATGGATACACTGCCAAGAGCCCTGCGATTATCAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208074756|gb|GD869541.1|GD869541
EST:     GAGAATTGTGGAAG                         ACTGAGACACTAGCTGATCATAT-AAATTTGA-CATGGTTATACTGCCAAG
genomic: GAGAATTGTGGAAGgtattctttt ... ctatctgcagACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAG
EST: gi|9259017|gb|BE347164.1|BE347164
EST:     CTCCCCAAGAACTGGATTACTTGCTTTGCGGCCGGAGAGAATTGTGGAAG                         ACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAG
genomic: CTCCCCAAGAACTGGATTACTTGCTTTGCGGCCGGAGAGAATTGTGGAAGgtattctttt ... ctatctgcagACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAG
EST: gi|15815265|gb|BI787540.1|BI787540
EST:     CTCCCCAAGAACTGGATTACTTGCTTTGCGGCCGGAGAGAATTGTGGAAG                         ACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAG
genomic: CTCCCCAAGAACTGGATTACTTGCTTTGCGGCCGGAGAGAATTGTGGAAGgtattctttt ... ctatctgcagACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAG
EST: gi|192301647|gb|FG997603.1|FG997603
EST:     CTCCCCAAGAACTGGATTACTTGCTTTGCGGCCGGAGAGAATTGTGGAAG                         ACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAG
genomic: CTCCCCAAGAACTGGATTACTTGCTTTGCGGCCGGAGAGAATTGTGGAAGgtattctttt ... ctatctgcagACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAG
EST: gi|192314633|gb|FK008141.1|FK008141
EST:     CTCCCCAAGAACTGGATTACTTGCTTTGCGGCCGGAGAGAATTGTGGAAG                         ACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAG
genomic: CTCCCCAAGAACTGGATTACTTGCTTTGCGGCCGGAGAGAATTGTGGAAGgtattctttt ... ctatctgcagACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAG
EST: gi|192327460|gb|FK017817.1|FK017817
EST:     CTCCCCAAGAACTGGATTACTTGCTTTGCGGCCGGAGAGAATTGTGGAAG                         ACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAG
genomic: CTCCCCAAGAACTGGATTACTTGCTTTGCGGCCGGAGAGAATTGTGGAAGgtattctttt ... ctatctgcagACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAG
EST: gi|9899529|gb|BE608497.1|BE608497
EST:     CTCCCCAAGAACTGGATTACTTGCTTTGCGGCCGGAGAGAATCGTGGAAG                         ACTGAGACACTAGCTGATCATATAAATTTTGACCATTGGT-ATACTGCCAA
genomic: CTCCCCAAGAACTGGATTACTTGCTTTGCGGCCGGAGAGAATTGTGGAAGgtattctttt ... ctatctgcagACTGAGACACTAGCTGATCATATAAAATTTGACCAT-GGTTATACTGCCAA
EST: gi|51335365|gb|CO979231.1|CO979231
EST:     GCGGCCGGAGAGAATTGTGGAAG                         ACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAG
genomic: GCGGCCGGAGAGAATTGTGGAAGgtattctttt ... ctatctgcagACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAG
EST: gi|254331304|gb|GR845883.1|GR845883
EST:     CTCCCCAAGAACTGGATTACTTGCTTTGCGGCCGGAGAGAATTGTGGAAG                         ACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAG
genomic: CTCCCCAAGAACTGGATTACTTGCTTTGCGGCCGGAGAGAATTGTGGAAGgtattctttt ... ctatctgcagACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAG
EST: gi|192314634|gb|FK008142.1|FK008142
EST:     CTCCCCAAGAACTGGATTACTTGCTTTGCGGCCGGAGAGAATTGTGGAAG                         ACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAG
genomic: CTCCCCAAGAACTGGATTACTTGCTTTGCGGCCGGAGAGAATTGTGGAAGgtattctttt ... ctatctgcagACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttagatgttaccatggataatgtagttataattttttttctcctatctgcagACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAGAGCCCTGCCATAGTTAAT
                                  ttttttttctcctatc  CT-rich tract
               atggataatgtagtta  TA-rich tract