1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...acacgaggatctgctatttgcatctcagttgatctttagcctgttgaacttatcattaccattttctttatcacatgattttaaaattgcaatcattcagGTTGTATCAGAATATCGAAACCAAGGAATGGAGTTCATACTTCAAGCAATTAATTATCCTACCTTCCTAGAGGATGTCACTGGACTGACAGAGTTGATGA
species | Glycine max |
transcript | GLYMA12G01250.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TGACCCTTATAGGTTACTCCTCCTCCAGCTGCACAGCCTGTAGTCATACA GTTGTATCAGAATATCGAAACCAAGGAATGGAGTTCATACTTCAAGCAATTEST: gi|209696729|gb|BW672908.1|BW672908
genomic: TGACCCTTATAGGTTACTCCTCCTCCAGCTGCACAGCCTGTAGTCATACAgtaagtctgg ... aatcattcagGTTGTATCAGAATATCGAAACCAAGGAATGGAGTTCATACTTCAAGCAATT
EST: TGACCCTTATAGGTTACTCCTCCTCCAGCTGCACAGCCTGTAGTCATACA GTTGTATCAGAATATCGAAACCAAGGAATGGAGTTCATACTTCAAGCAATTEST: gi|193654698|gb|FK599184.1|FK599184
genomic: TGACCCTTATAGGTTACTCCTCCTCCAGCTGCACAGCCTGTAGTCATACAgtaagtctgg ... aatcattcagGTTGTATCAGAATATCGAAACCAAGGAATGGAGTTCATACTTCAAGCAATT
EST: TGACCCTTATAGGTTACTCCTCCTCCAGCTGCACAGCCTGTAGTCATACA GTTGTATCAGAATATCGAAACCAAGGAATGGAGTTCATACTTCAAGCAATT
genomic: TGACCCTTATAGGTTACTCCTCCTCCAGCTGCACAGCCTGTAGTCATACAgtaagtctgg ... aatcattcagGTTGTATCAGAATATCGAAACCAAGGAATGGAGTTCATACTTCAAGCAATT
gaacttatcattaccattttctttatcacatgattttaaaattgcaatcattcagGTTGTATCAGAATATCGAAACCAAGGAATGGAGTTCATACTTCAAGCAATTAATTATCCTACCTTCCTAGAGGATGTCACTGGACTGACAGAGTTGATGA
attttctttatcacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acacgaggatctgctatttgcatctcagttgatctttagcctgttgaacttatcattaccattttctttatcacatgattttaaaattgcaatcattcagGTTGTATCAGAATATCGAAACCAAGGAATGGAGTTCATACTTCAAGCAATTAATTATCCTACCTTCCTAGAGGATGTCACTGGACTGACAGAGTTGATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - -tctgcta
- - - - - - - - - tgcatct
- - - - - - - - - - - - - - - - - - -agcctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacatga