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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttctttaccatgagtccatgactactctagagtctaagactaaaacaatttcactaaaaaaactattctccttttctctgcagGGTGAATCTCAAACAGGGAAAGCGCCATGGCAGGGG

Basic information

species Glycine max
transcript GLYMA11G37770.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58024808|gb|CX711549.1|CX711549
EST:     TTGATTCTCAGTGGATTGTTCACCAAGGTATTCCCTCACTAGGGAATCAG                         GGTGAATCTCAAACAGGGAAAGCGCCATGGCAGGGG
genomic: TTGATTCTCAGTGGATTGTTCACCAAGGTATTCCCTCACTAGGGAATCAGgtattttctt ... ttctctgcagGGTGAATCTCAAACAGGGAAAGCGCCATGGCAGGGG
EST: gi|51337681|gb|CO981547.1|CO981547
EST:     TTGATTCTCAGTGGATTGTTCACCAAGGTATTCCCTCACTAGGGAATCAG                         GGTGAATCTCAAACAGGGAAAGCGCCATGGCAGGGG
genomic: TTGATTCTCAGTGGATTGTTCACCAAGGTATTCCCTCACTAGGGAATCAGgtattttctt ... ttctctgcagGGTGAATCTCAAACAGGGAAAGCGCCATGGCAGGGG
EST: gi|57574426|gb|CX547401.1|CX547401
EST:     TTGATTCTCAGTGGATTGTTCACCAAGGTATTCCCTCACTAGGGAATCAG                         GGTGAATCTCAAACAGGGAAAGCGCCATGGCAGGGG
genomic: TTGATTCTCAGTGGATTGTTCACCAAGGTATTCCCTCACTAGGGAATCAGgtattttctt ... ttctctgcagGGTGAATCTCAAACAGGGAAAGCGCCATGGCAGGGG
EST: gi|16996411|gb|BM085783.1|BM085783
EST:     TTGATTCTCAGTGGATTGTTCACCAAGGTATTCCCTCACTAGGGAATCAG                         GGTGAATCTCAAACAGGGAAAGCGCCATGGCAGGGG
genomic: TTGATTCTCAGTGGATTGTTCACCAAGGTATTCCCTCACTAGGGAATCAGgtattttctt ... ttctctgcagGGTGAATCTCAAACAGGGAAAGCGCCATGGCAGGGG
EST: gi|192315451|gb|FK009225.1|FK009225
EST:     TTGATTCTCAGTGGATTGTTCACCAAGGTATTCCCTCACTAGGGAATCAG                         GGTGAATCTCAAACAGGGAAAGCGCCATGGCAGGGG
genomic: TTGATTCTCAGTGGATTGTTCACCAAGGTATTCCCTCACTAGGGAATCAGgtattttctt ... ttctctgcagGGTGAATCTCAAACAGGGAAAGCGCCATGGCAGGGG
EST: gi|57574192|gb|CX547167.1|CX547167
EST:     TTGATTCTCAGTGGATTGTTCACCAAGGTATTCCCTCACTAGGGAATCAG                         GGTGAATCTCAAACAGGGAAAGCGCCATGGCAGGGG
genomic: TTGATTCTCAGTGGATTGTTCACCAAGGTATTCCCTCACTAGGGAATCAGgtattttctt ... ttctctgcagGGTGAATCTCAAACAGGGAAAGCGCCATGGCAGGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agagtctaagactaaaacaatttcactaaaaaaactattctccttttctctgcagGGTGAATCTCAAACAGGGAAAGCGCCATGGCAGGGG
                       cactaaa  putative branch site (score: 2)
                                  ctattctccttttctc  putative PPT
            taaaacaatttcacta  TA-rich tract