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gtatctatttatcatctaacatcattttcaaaactttagttatccgatttgtatgcactcaatcttaatgatgctgtttgacagGGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTGAAAACTGCATAGTGGCTAGCAGGATTTTCCAACATAGTTCTGAAGTTTT
species | Glycine max |
transcript | GLYMA11G18710.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGG GGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTGEST: gi|151401231|gb|EV271045.1|EV271045
genomic: TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGGgtatctattt ... tgtttgacagGGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTG
EST: TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGG GGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTGEST: gi|18733631|gb|BM527732.1|BM527732
genomic: TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGGgtatctattt ... tgtttgacagGGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTG
EST: TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGG GGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTGEST: gi|213597888|gb|DB958269.1|DB958269
genomic: TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGGgtatctattt ... tgtttgacagGGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTG
EST: TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGG GGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTGEST: gi|17400577|gb|BM177359.1|BM177359
genomic: TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGGgtatctattt ... tgtttgacagGGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTG
EST: TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGG GGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTEST: gi|58023069|gb|CX709810.1|CX709810
genomic: TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGGgtatctattt ... tgtttgacagGGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCT
EST: TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGG GGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTGEST: gi|254333372|gb|GR850622.1|GR850622
genomic: TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGGgtatctattt ... tgtttgacagGGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTG
EST: TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGG GGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTGEST: gi|10848066|gb|BF070623.1|BF070623
genomic: TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGGgtatctattt ... tgtttgacagGGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTG
EST: TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGG GGTCTTGATGATCTAATCAGTTTATTEST: gi|33388989|gb|CA852196.1|CA852196
genomic: TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGGgtatctattt ... tgtttgacagGGTCTTGATGATCTAATCAGTTTATT
EST: TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGG GGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTGEST: gi|254343175|gb|GR859337.1|GR859337
genomic: TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGGgtatctattt ... tgtttgacagGGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTG
EST: TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGG GGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTGEST: gi|57574504|gb|CX547479.1|CX547479
genomic: TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGGgtatctattt ... tgtttgacagGGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTG
EST: TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGG GGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTGEST: gi|12773221|gb|BG238148.1|BG238148
genomic: TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGGgtatctattt ... tgtttgacagGGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTG
EST: TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGG GGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTG
genomic: TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGGgtatctattt ... tgtttgacagGGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTG
aaaactttagttatccgatttgtatgcactcaatcttaatgatgctgtttgacagGGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTGAAAACTGCATAGTGGCTAGCAGGATTTTCCAACATAGTTCTGAAGTTTT
tcttaat putative branch site (score: 3)
tttagttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatctatttatcatctaacatcattttcaaaactttagttatccgatttgtatgcactcaatcttaatgatgctgtttgacagGGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTGAAAACTGCATAGTGGCTAGCAGGATTTTCCAACATAGTTCTGAAGTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG