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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatccatttctttttcctaaagtaatctgtctgtgtgtgtttcagacaaatgtctgcctatcaatgattttgtatttttctcagGTCTGCATGCAAACCCTACACTGGAGAAATAGTCCATTGATCATGTCACAATGTGGCTCCAAAGGATCTTCTATTAATATCAGTCAAATGGTTGCCTGTG

Basic information

species Glycine max
transcript GLYMA11G15530.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G15530.1 (Glycine max), 3'ss of exon 13
lower sequence: GRMZM2G080176_T01 (Zea mays), 3'ss of exon 15
---gtatccatttctttttcctaa-agtaa-tctgtctg-tgtgtgtttcagacaaatgtctgcctatcaatgattttgt---------atttttctcagGTCTGCATGCAAACCCTACACTGGAGAAATAGTCCATTGATCATGTCACAATGTGGCTCCAAAGGATCTTCTATTAATATCAGTCAAATGGTTGCCTGTG
   |||   ||||         |  ||| | | ||||   | ||  |||   |    | |  ||  |||  ||| ||| |         | |||| |||||| |||||| | || || |||||||| || || |||||||| ||||| || ||||| |||||||| ||| | || ||||||||||| |||||||| ||||
gatgtagtgattttgccaggtgactagtgactgtgtccactctgaatttggtatgctttttagcggatcgttgaatttcttgtgatgaaacttttttcagGTGTGCATGGATACGCTTCACTGGAGGAACAGCCCATTGATTATGTCTCAGTGTGGTTCCAAAGGTTCTCCAATCAATATCAGTCAGATGGTTGCATGTG

upper sequence: GLYMA11G15530.1 (Glycine max), 3'ss of exon 13
lower sequence: AT5G60040.1 (Arabidopsis thaliana), 3'ss of exon 16
-------gtatccattt-ctttttcctaaag-taatctgtctgtgtgt--gtttcagacaaatgtct----gcctatcaatgattttgtatttttctcagGTCTGCATGCAAACCCTACACTGGAGAAATAGTCCATTGATCATGTCACAATGTGGCTCCAAAGGATCTTCTATTAATATCAGTCAAATGGTTGCCTGTG
         ||  || | |||| | | ||||  |||   ||    |    ||| |  || ||  |      || |     ||   || |||  |   |||| ||| |||       |||| |||||||||||||| |||||||||||||||||||| |||||||||||| |||| ||||||||||| ||||| || ||||
tctttgataatttatctactttattcaaaagacaatgaatccagatcctggttacctaccaaaatactaaagcttcatcttgtcattatatgatatacagGCCTGTATGAGCGGATTACATTGGAGAAATAGTCCCTTGATCATGTCACAATGTGGTTCCAAAGGATCTCCTATCAATATCAGTCAGATGGTCGCATGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgtgtgtgtttcagacaaatgtctgcctatcaatgattttgtatttttctcagGTCTGCATGCAAACCCTACACTGGAGAAATAGTCCATTGATCATGTCACAATGTGGCTCCAAAGGATCTTCTATTAATATCAGTCAAATGGTTGCCTGTG
                                      ttttgtatttttctc  CT-rich tract
                             tatcaatgattttgta  TA-rich tract