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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttgtctattgtatcttttgaacaccggttacaaacttggggatgttattcaaatttctgatatttatgttttgctgcttatcagAAGAAGTTTTGCTGGTGAGTTTTGGTTGCTGATAGAAAGGGACTCTGGGAGAGGGTGTTTTCGAATCATGGTGTTTCTAGTGCTGACCTTGCACATGATG

Basic information

species Glycine max
transcript GLYMA11G12260.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209719530|gb|BW651008.1|BW651008
EST:     AAGAAGAGCTGCTTGCTTACATTGATAGTCAAGAAAAAGCTAGGTTACGG                         AAGAAGTTTTGCTGGTGAGTTTTGGTTGCTGATAGAAAGGGACTCTGGGAG
genomic: AAGAAGAGCTGCTTGCTTACATTGATAGTCAAGAAAAAGCTAGGTTACGGgtaagtttgt ... tgcttatcagAAGAAGTTTTGCTGGTGAGTTTTGGTTGCTGATAGAAAGGGACTCTGGGAG
EST: gi|209713243|gb|BW681782.1|BW681782
EST:     AAGAAGAGCTGCTTGCTTACATTGATAGTCAAGAAAAAGCTAGGTTACGG                         AAGAAGTTTTGCTGGTGAGTTTTGGTTGCTGATAGAAAGGGACTCTGGGAG
genomic: AAGAAGAGCTGCTTGCTTACATTGATAGTCAAGAAAAAGCTAGGTTACGGgtaagtttgt ... tgcttatcagAAGAAGTTTTGCTGGTGAGTTTTGGTTGCTGATAGAAAGGGACTCTGGGAG
EST: gi|193392641|gb|FK358800.1|FK358800
EST:     AAGAAGAGCTGCTTGCTTACATTGATAGTCAAGAAAAAGCTAGGTTACGG                         AAGAAGTTTTGCTGGTGAGTTTTGGTTGCTGATAGAAAGGGACTCTGGGAG
genomic: AAGAAGAGCTGCTTGCTTACATTGATAGTCAAGAAAAAGCTAGGTTACGGgtaagtttgt ... tgcttatcagAAGAAGTTTTGCTGGTGAGTTTTGGTTGCTGATAGAAAGGGACTCTGGGAG
EST: gi|214004554|gb|DB985333.1|DB985333
EST:     AAGAAGAGCTGCTTGCTTACATTGATAGTCAAGAAAAAGCTAGGTTACGG                         AAGAAGTTTTGCTGGTGAGTTTTGGTTGCTGATAGAAAGGGACTCTGGGAG
genomic: AAGAAGAGCTGCTTGCTTACATTGATAGTCAAGAAAAAGCTAGGTTACGGgtaagtttgt ... tgcttatcagAAGAAGTTTTGCTGGTGAGTTTTGGTTGCTGATAGAAAGGGACTCTGGGAG
EST: gi|193315770|gb|FK281850.1|FK281850
EST:     GCTTACATTGATAGTCAAGAAAAAGCTAGGTTACGG                         AAGAAGTTTTGCTGGTGAGTTTTGGTTGCTGATAGAAAGGGACTCTGGGAG
genomic: GCTTACATTGATAGTCAAGAAAAAGCTAGGTTACGGgtaagtttgt ... tgcttatcagAAGAAGTTTTGCTGGTGAGTTTTGGTTGCTGATAGAAAGGGACTCTGGGAG
EST: gi|58015266|gb|CX702008.1|CX702008
EST:     AAGAAGAGCTGCTTGCTTACATTGATAGTCAAGAAAAAGCTAGGTTACGG                         AAGAAGTTTTGCTGGTGAGTTTTGGTTGCTGATAGAAAGGGACTCTGGGAG
genomic: AAGAAGAGCTGCTTGCTTACATTGATAGTCAAGAAAAAGCTAGGTTACGGgtaagtttgt ... tgcttatcagAAGAAGTTTTGCTGGTGAGTTTTGGTTGCTGATAGAAAGGGACTCTGGGAG
EST: gi|58019538|gb|CX706280.1|CX706280
EST:     AAGAAGAGCTGCTTGCTTACATTGATAGTCAAGAAAAAGCTAGGTTACGG                         AAGAAGTTTTGCTGGTGAGTTTTGGTTGCTGATAGAAAGGGACTCTGGGAG
genomic: AAGAAGAGCTGCTTGCTTACATTGATAGTCAAGAAAAAGCTAGGTTACGGgtaagtttgt ... tgcttatcagAAGAAGTTTTGCTGGTGAGTTTTGGTTGCTGATAGAAAGGGACTCTGGGAG
EST: gi|208125799|gb|GD925939.1|GD925939
EST:     AAGAAGAGCTGCTTGCTTACATTGATTGTCAAGAAAAAGCTAGGTTACGG                         AAGAAGTTTTGCTGGTGAGTTTTGGTTGCTGATAGAAAGGGACTCTGGGAG
genomic: AAGAAGAGCTGCTTGCTTACATTGATAGTCAAGAAAAAGCTAGGTTACGGgtaagtttgt ... tgcttatcagAAGAAGTTTTGCTGGTGAGTTTTGGTTGCTGATAGAAAGGGACTCTGGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaaacttggggatgttattcaaatttctgatatttatgttttgctgcttatcagAAGAAGTTTTGCTGGTGAGTTTTGGTTGCTGATAGAAAGGGACTCTGGGAGAGGGTGTTTTCGAATCATGGTGTTTCTAGTGCTGACCTTGCACATGATG
                         ttctgat  putative branch site (score: 3)
                                       ttttgct  putative PPT
               ttattcaaatttctga  TA-rich tract