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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcttttttgtgcaaaagtattactgctgcttacaacaatattttaaatgttaccatgaataatgtagttataaatttatttttctcttttctgcagACTGAGACACTAGCCGATCATATAAAATTTGACCATGGTTATACTGCCAAGAGCCCTGCCATAGTTAAT

Basic information

species Glycine max
transcript GLYMA11G11490.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17400311|gb|BM177093.1|BM177093
EST:     CTCCCCAAGAACTGGATTACTTGCTTTGTGGCCGGAGAGAATTGTGGAAG                         ACTGAGACACTAGCCGATCATATAAAATTTGACCATGGTTATACTGCCAAG
genomic: CTCCCCAAGAACTGGATTACTTGCTTTGTGGCCGGAGAGAATTGTGGAAGgtattctttt ... ttttctgcagACTGAGACACTAGCCGATCATATAAAATTTGACCATGGTTATACTGCCAAG
EST: gi|7028762|gb|AW458545.1|AW458545
EST:     CTCCCCAAGAACTGGATTACTTGCTTTGTGGCCGGAGAGAATTGTGGAAG                         ACTGAGACACTAGCCGATCATATAAAATTTGACCATGGTTATACTGCCAAG
genomic: CTCCCCAAGAACTGGATTACTTGCTTTGTGGCCGGAGAGAATTGTGGAAGgtattctttt ... ttttctgcagACTGAGACACTAGCCGATCATATAAAATTTGACCATGGTTATACTGCCAAG
EST: gi|11275017|gb|BF325341.1|BF325341
EST:     CTCCCCAAGAACTGGATTACTTGCTTTGTGGCCGGAGAGAATTGTGGAAG                         ACTGAGACACTAGCCGATCATATAAAATTTGACCATGGTTATACTGCCAAG
genomic: CTCCCCAAGAACTGGATTACTTGCTTTGTGGCCGGAGAGAATTGTGGAAGgtattctttt ... ttttctgcagACTGAGACACTAGCCGATCATATAAAATTTGACCATGGTTATACTGCCAAG
EST: gi|15814707|gb|BI786982.1|BI786982
EST:     CTCCCCAAGAACTGGATTACTTGCTTTGTGGCCGGAGAGAATTGTGGAAG                         ACTGAGACACTAGCCGATCATATAAAATTTGACCATGGTTATACTGCCAAG
genomic: CTCCCCAAGAACTGGATTACTTGCTTTGTGGCCGGAGAGAATTGTGGAAGgtattctttt ... ttttctgcagACTGAGACACTAGCCGATCATATAAAATTTGACCATGGTTATACTGCCAAG
EST: gi|23732846|gb|BU764597.1|BU764597
EST:     GGATTACTTGCTTTGTGGCCGGAGAGAATTGTGGAAG                         ACTGAGACACTAGCCGATCATATAAAATTTGACCATGGTTATACTGCCAAG
genomic: GGATTACTTGCTTTGTGGCCGGAGAGAATTGTGGAAGgtattctttt ... ttttctgcagACTGAGACACTAGCCGATCATATAAAATTTGACCATGGTTATACTGCCAAG
EST: gi|208175474|gb|GD976869.1|GD976869
EST:     GGCCGGGGAGAATTGTGGAAG                         ACTGAGACACTAGCCGATCATATAAAATTTGACCATGGTTATACTGCCAAG
genomic: GGCCGGAGAGAATTGTGGAAGgtattctttt ... ttttctgcagACTGAGACACTAGCCGATCATATAAAATTTGACCATGGTTATACTGCCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaaatgttaccatgaataatgtagttataaatttatttttctcttttctgcagACTGAGACACTAGCCGATCATATAAAATTTGACCATGGTTATACTGCCAAGAGCCCTGCCATAGTTAAT
                                 tttatttttctctttt  CT-rich tract
             atgaataatgtagtta  TA-rich tract