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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatggaaaatcagcgtgtgttttgttttgggtagagtaatcccaccaaaagacatttctttatcaaatgcaatttctcttaccaatgatctgacagGCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTTCCAAGAGTGAAAGTAAGGTGGAGAGAGCACCCCACTCTGCAAGTGATGG

Basic information

species Glycine max
transcript GLYMA11G03650.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26060112|gb|CA803026.1|CA803026
EST:     CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAA                         GCCATACAGAAAGGATTAAGGATTCTTCAATTCTTTTCAAGAATGCTGCTT
genomic: CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAAgtaagtatgg ... gatctgacagGCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTT
EST: gi|207707676|gb|GD689106.1|GD689106
EST:     CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAA                         GCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTT
genomic: CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAAgtaagtatgg ... gatctgacagGCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTT
EST: gi|13311789|gb|BG405440.1|BG405440
EST:     GCCGACTCCAAGCCCAAGACAA                         GCCATACAGAAAGGATTAAGGATTCTTCATATCTCTTCAAGAATGCTGCTT
genomic: GCCGACTCCAAGCCCAAGACAAgtaagtatgg ... gatctgacagGCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTT
EST: gi|298191871|gb|HO035953.1|HO035953
EST:     CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAA                         GCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTT
genomic: CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAAgtaagtatgg ... gatctgacagGCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTT
EST: gi|16106417|gb|BI894157.1|BI894157
EST:     CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAA                         GCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTT
genomic: CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAAgtaagtatgg ... gatctgacagGCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTT
EST: gi|8827625|gb|BE211355.1|BE211355
EST:     CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAA                         GCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTT
genomic: CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAAgtaagtatgg ... gatctgacagGCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTT
EST: gi|193497044|gb|FK462056.1|FK462056
EST:     CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAA                         GCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTT
genomic: CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAAgtaagtatgg ... gatctgacagGCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTT
EST: gi|208137784|gb|GD938420.1|GD938420
EST:     CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAA                         GCCATACAGAAAGGATTAAGGA
genomic: CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAAgtaagtatgg ... gatctgacagGCCATACAGAAAGGATTAAGGA
EST: gi|208088408|gb|GD890696.1|GD890696
EST:     CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAA                         GCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAAGAATGCTGC
genomic: CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAAgtaagtatgg ... gatctgacagGCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAA-GAATGCTGC
EST: gi|151403372|gb|EV273182.1|EV273182
EST:     CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAA                         GCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTT
genomic: CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAAgtaagtatgg ... gatctgacagGCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTT
EST: gi|208297488|gb|GE094467.1|GE094467
EST:     CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAA                         GCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTT
genomic: CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAAgtaagtatgg ... gatctgacagGCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTT
EST: gi|10845117|gb|BF068283.1|BF068283
EST:     CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAA                         GCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTT
genomic: CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAAgtaagtatgg ... gatctgacagGCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTT
EST: gi|16106407|gb|BI894147.1|BI894147
EST:     CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAA                         GCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTT
genomic: CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAAgtaagtatgg ... gatctgacagGCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTT
EST: gi|193684401|gb|FK621873.1|FK621873
EST:     CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAA                         GCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTT
genomic: CAAAAATGATGCCAAAGAGAAACATGGAGCCGACTCCAAGCCCAAGACAAgtaagtatgg ... gatctgacagGCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaccaaaagacatttctttatcaaatgcaatttctcttaccaatgatctgacagGCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTTCCAAGAGTGAAAGTAAGGTGGAGAGAGCACCCCACTCTGCAAGTGATGG
                                  ctcttac  putative branch site (score: 3)
            atttctttatcaaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtatggaaaatcagcgtgtgttttgttttgggtagagtaatcccaccaaaagacatttctttatcaaatgcaatttctcttaccaatgatctgacagGCCATACAGAAAGGATTAAGGATTCTTCAAATCTCTTCAAGAATGCTGCTTCCAAGAGTGAAAGTAAGGTGGAGAGAGCACCCCACTCTGCAAGTGATGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA