Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttttgatgaaaaaatattattttatcattttttatcaagaaaaaaaatgaaatcatctactatcaaggatatttctgaacagcttagtagttatatatagttaggtgctaatggtttcatgcattaatgcagGGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGACAAGTGGAGAACCTGAAACACCCTGCCCACATATAAGACTCCAACACAG

Basic information

species Glycine max
transcript GLYMA11G02540.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209716107|gb|BW668646.1|BW668646
EST:     GGACGGGCATGGCCAACCGGCACTACTATACATCGTTCCATTTACCCTTG                         GGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
genomic: GGACGGGCATGGCCAACCGGCACTACTATACATCGTTCCATTTACCCTTGgtacttttga ... attaatgcagGGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
EST: gi|254328593|gb|GR832965.1|GR832965
EST:     GGACGGGCATGGCCAACCGGCACTACTATACATCGTTCCATTTACCCTTG                         GGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
genomic: GGACGGGCATGGCCAACCGGCACTACTATACATCGTTCCATTTACCCTTGgtacttttga ... attaatgcagGGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
EST: gi|208078814|gb|GD874526.1|GD874526
EST:     CGGGCATGGCCAACCGGCACTACTATACATCGTTCCATTTACCCTTG                         GGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
genomic: CGGGCATGGCCAACCGGCACTACTATACATCGTTCCATTTACCCTTGgtacttttga ... attaatgcagGGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
EST: gi|207770954|gb|GD744697.1|GD744697
EST:     AACCGGTCACTACTATACATCGTTCCATTTACCCTTG                         GGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
genomic: AACCGG-CACTACTATACATCGTTCCATTTACCCTTGgtacttttga ... attaatgcagGGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
EST: gi|254324665|gb|GR834090.1|GR834090
EST:     GGACGGGCATGGCCAACCGGCACTACTATACATCGTTCCATTTACCCTTG                         GGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
genomic: GGACGGGCATGGCCAACCGGCACTACTATACATCGTTCCATTTACCCTTGgtacttttga ... attaatgcagGGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
EST: gi|207838574|gb|GD812434.1|GD812434
EST:     GGACGGGCATGGCCAACCGGCACTACTATACATCGTTCCATTTACCCTTG                         GGACCCTGATGACATTGGGGCGGAAGCGA
genomic: GGACGGGCATGGCCAACCGGCACTACTATACATCGTTCCATTTACCCTTGgtacttttga ... attaatgcagGGACCCTGATGACATTGGGGCGGAAGCGA
EST: gi|254341537|gb|GR852674.1|GR852674
EST:     GGACGGGCATGGCCAACCGGCACTACTATACATCGTTCCATTTACCCTTG                         GGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
genomic: GGACGGGCATGGCCAACCGGCACTACTATACATCGTTCCATTTACCCTTGgtacttttga ... attaatgcagGGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
EST: gi|6666717|gb|AW278176.1|AW278176
EST:     GGACGGGCATGGCCAACCGGCACTACTATACATCGTTCCATTTACCCTTG                         GGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
genomic: GGACGGGCATGGCCAACCGGCACTACTATACATCGTTCCATTTACCCTTGgtacttttga ... attaatgcagGGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
EST: gi|193349847|gb|FK314933.1|FK314933
EST:     CGGGCATGGCCAACCGGCACTACTATACATCGTTCCATTTACCCTTG                         GGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
genomic: CGGGCATGGCCAACCGGCACTACTATACATCGTTCCATTTACCCTTGgtacttttga ... attaatgcagGGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
EST: gi|208265758|gb|GE060901.1|GE060901
EST:     GGACGGGCATGGCCAACCGGCACTACTATACATCGTTCCATTTACCCTTG                         GGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
genomic: GGACGGGCATGGCCAACCGGCACTACTATACATCGTTCCATTTACCCTTGgtacttttga ... attaatgcagGGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
EST: gi|254324666|gb|GR834091.1|GR834091
EST:     GGACGGGCATGGCCAACCGGCACTACTATACATCGTTCCATTTACCCTTG                         GGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
genomic: GGACGGGCATGGCCAACCGGCACTACTATACATCGTTCCATTTACCCTTGgtacttttga ... attaatgcagGGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
EST: gi|214005026|gb|DB985414.1|DB985414
EST:     GGACGGGCATGGCCAACCGGCACTACTATACATCCCACCATTTACCCTTG                         GGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
genomic: GGACGGGCATGGCCAACCGGCACTACTATACATCGTTCCATTTACCCTTGgtacttttga ... attaatgcagGGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
EST: gi|214004354|gb|DB989359.1|DB989359
EST:     GGACGGGCATGGCCAACCGGCACTACTATACATCGTTCCATTTACCCTTG                         GGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
genomic: GGACGGGCATGGCCAACCGGCACTACTATACATCGTTCCATTTACCCTTGgtacttttga ... attaatgcagGGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
EST: gi|193617158|gb|FK571184.1|FK571184
EST:     CGGGCATGGCCAACCGGCACTACTATACATCGTTCCATTTACCCTTG                         GGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
genomic: CGGGCATGGCCAACCGGCACTACTATACATCGTTCCATTTACCCTTGgtacttttga ... attaatgcagGGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
EST: gi|192310357|gb|FK002237.1|FK002237
EST:     GGACGGGCATGGCCAACCGGCACTACTATACATCGTTCCATTTACCCTTG                         GGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
genomic: GGACGGGCATGGCCAACCGGCACTACTATACATCGTTCCATTTACCCTTGgtacttttga ... attaatgcagGGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacagcttagtagttatatatagttaggtgctaatggtttcatgcattaatgcagGGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGACAAGTGGAGAACCTGAAACACCCTGCCCACATATAAGACTCCAACACAG
      ttagtagttatatata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacttttgatgaaaaaatattattttatcattttttatcaagaaaaaaaatgaaatcatctactatcaaggatatttctgaacagcttagtagttatatatagttaggtgctaatggtttcatgcattaatgcagGGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGACAAGTGGAGAACCTGAAACACCCTGCCCACATATAAGACTCCAACACAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA