1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtctctgatcttgttttgttcatcacatagttatttttctgttcatcacatagactatatctcattcatgttatttttatttttttcagCTCTACGCAAATTATGCTATCGGAAAGGATGTGCAGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTG
species | Glycine max |
transcript | GLYMA10G42940.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CTATTGGTGAGGGAATGACTAGAAAGGATCATTCTGATGTGTCCAACCAG CTCTACGCAAATTATGCTATCGGAAAGGATGTGCAGGCAATGEST: gi|15813509|gb|BI785784.1|BI785784
genomic: CTATTGGTGAGGGAATGACTAGAAAGGATCATTCTGATGTGTCCAACCAGgtctctgatc ... tttttttcagCTCTACGCAAATTATGCTATCGGAAAGGATGTGCAGGCAATG
EST: CTATTGGTGAGGGAATGACTAGAAAGGATCATTCTGATGTGTCCAACCAG CTCTACGCAAATTATGCTATCGGAAAGGATGTGCAGGCAATGAAAGCAGTGEST: gi|16283344|gb|BI945501.1|BI945501
genomic: CTATTGGTGAGGGAATGACTAGAAAGGATCATTCTGATGTGTCCAACCAGgtctctgatc ... tttttttcagCTCTACGCAAATTATGCTATCGGAAAGGATGTGCAGGCAATGAAAGCAGTG
EST: TATTGGTGAGGGAATGACTAGAAAGGGATCATTCTGATGTGTCCAACCAG CTCTACGCAAATTATGCTATCGGAAAGGATGTGCAGGCAATGAAAGCAGTGEST: gi|16283207|gb|BI945427.1|BI945427
genomic: TATTGGTGAGGGAATGACTAGAAA-GGATCATTCTGATGTGTCCAACCAGgtctctgatc ... tttttttcagCTCTACGCAAATTATGCTATCGGAAAGGATGTGCAGGCAATGAAAGCAGTG
EST: CTATTGGTGAGGGAATGACTAGAAAGGATCATTCTGATGTGTCCAACCAG CTCTACGCAGATTATGCTATCGGAAAGGATGTGCAGGCAATGAAAGCAGTGEST: gi|16279679|gb|BI943560.1|BI943560
genomic: CTATTGGTGAGGGAATGACTAGAAAGGATCATTCTGATGTGTCCAACCAGgtctctgatc ... tttttttcagCTCTACGCAAATTATGCTATCGGAAAGGATGTGCAGGCAATGAAAGCAGTG
EST: CTATTGGTGAAGGAATGACTAGAAAGGATCATTCTGATGTGTCCAACCAG CTCTACGCAAATTATGCTATCGGAAAGGATGTGCAAGCAATGAAAGCAGTGEST: gi|7686714|gb|AW757362.1|AW757362
genomic: CTATTGGTGAGGGAATGACTAGAAAGGATCATTCTGATGTGTCCAACCAGgtctctgatc ... tttttttcagCTCTACGCAAATTATGCTATCGGAAAGGATGTGCAGGCAATGAAAGCAGTG
EST: GTGAGGGAATGACTAGAAAGGATCATTCTGATGTGTCCAACCAG CTCTACGCAAATTATGCTATCGGAAAGGATGTGCAGGCAATGAAAGCAGTG
genomic: GTGAGGGAATGACTAGAAAGGATCATTCTGATGTGTCCAACCAGgtctctgatc ... tttttttcagCTCTACGCAAATTATGCTATCGGAAAGGATGTGCAGGCAATGAAAGCAGTG
ttttctgttcatcacatagactatatctcattcatgttatttttatttttttcagCTCTACGCAAATTATGCTATCGGAAAGGATGTGCAGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTG
ttatttttattttttt CT-rich tract
tatatctcattcatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctctgatcttgttttgttcatcacatagttatttttctgttcatcacatagactatatctcattcatgttatttttatttttttcagCTCTACGCAAATTATGCTATCGGAAAGGATGTGCAGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC