Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatgatcttgattgactgagaagatttatcatgcctatttttatctagtttgctgtaatagaaatttacattacaaccttttgcatctatcttactgatttcttgtgtgactggggcagGTAGTGTATGCAATAATGCACAGGCAGGAAGTCTTTCAGCCATTCAAGAATCATCCACGCTTCAATGAACTGATTGATAACATTTATACT

Basic information

species Glycine max
transcript GLYMA10G38920.2
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38920.2 (Glycine max), 3'ss of exon 13
lower sequence: LOC_Os01g56630.2 (Oryza sativa), 3'ss of exon 13
gtaaatgatcttgattgactgagaagatttatcatgcctatttttatctagtttgctgtaatagaaatttacattacaaccttttgcatctatcttactgatttcttgtgtgactgg-ggcagGTAGTGTATGCAATAATGCACAGGCAGGAAGTCTTTCAGCCATTCAAGAATCATCCACGCTTCAATGAACTGATTGATAACATTTATACT
                                            ||| |  |     | |||  | ||||||  |  | |   | |     ||  |||||  ||||  | ||  |     ||||| |||||||| ||  ||||  | || || || |||||||||||||| || ||||| |||||||||||| || |||| || ||||| || 
-------------------------------------------gtatgtgctgactagcaatt-atatttactctgtacctcatagggagaatactactg-cttctaatatgtgtatcaacagGTCGTGTATGCTATCTTGCATCGACAAGAGGTATTTCAGCCATTCAAAAACCATCCCCGCTTCAATGAATTGCTTGAGAATATTTACACA

upper sequence: GLYMA10G38920.2 (Glycine max), 3'ss of exon 13
lower sequence: Vv05s0020g04100.t01 (Vitis vinifera), 3'ss of exon 13
gtaaatgatcttgattgactgagaagatttatcatgcctatttttatctagtttgctgta-----atagaaatttacattacaaccttttgcatctatcttactgatttcttgtgtgactggggcagGTAGTGTATGCAATAATGCACAGGCAGGAAGTCTTTCAGCCATTCAAGAATCATCCACGCTTCAATGAACTGATTGATAACATTTATACT
|||       ||| |||  ||  ||    ||   |    | || |||||  | ||    |     ||| |||| |  ||||  ||||||| |||   |  ||    |      |||   | |||||||| || ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||| ||| |||| || || || |||
gtatcatcatttgtttgtgtggcaactaatacattatagacttgtatctgttatgtctcacaaatatacaaatct-tattagcacctttt-catgctttataaaattactcactgtattttgggcagGTTGTATATGCAATAATGCACAGACAGGAGGTCTTTCAGCCTTTCAAGAATCATCCACGATTCAATGAGCTGCTTGAAAATATCTACACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151393515|gb|EV263390.1|EV263390
EST:     TAGAAATAATAAATGCAATCCTGACTTATGCACTACCTCGGAATCCCGAG                         GTAGTGTATGCAATAATGCACAGGCAGGAAGTCTTTCAGCCATTCAAGAAT
genomic: TAGAAATAATAAATGCAATCCTGACTTATGCACTACCTCGGAATCCCGAGgtaaatgatc ... actggggcagGTAGTGTATGCAATAATGCACAGGCAGGAAGTCTTTCAGCCATTCAAGAAT
EST: gi|9898564|gb|BE607532.1|BE607532
EST:     TAGAAATAATAAATGCAATCCTGACTTATGCACTACCTCGGAATCCCGAG                         GTAGTGTATGCAATAATGCACAGGCAGGAAGTCTTTCAGCCATTCAAGAAT
genomic: TAGAAATAATAAATGCAATCCTGACTTATGCACTACCTCGGAATCCCGAGgtaaatgatc ... actggggcagGTAGTGTATGCAATAATGCACAGGCAGGAAGTCTTTCAGCCATTCAAGAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttacattacaaccttttgcatctatcttactgatttcttgtgtgactggggcagGTAGTGTATGCAATAATGCACAGGCAGGAAGTCTTTCAGCCATTCAAGAATCATCCACGCTTCAATGAACTGATTGATAACATTTATACT
                            tactgat  putative branch site (score: 2)
     attacaa  TA-rich tract