1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaaagctctacttaactgttaacgtaggatttgagcactttcatgagtatcttatcaaacttgaattatcactctgggtctacatttcaacaatatagttggtcatatttttcaattgaatcacgtttgttcttcagGTCAGGAAAATGCCTCGAATGTATGTTTAGAGGTAGTGAAAACACTGCCACAGTTGCAACAGAAAGAGCCACAATCAAGAGGTGGCAGATTTGGTGATAA
species | Glycine max |
transcript | GLYMA10G38680.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TGGCGTTGTNTTTGATGTACCAGCTAAAGATTTAGACATATATCTTAATG GTCAGGAAAATGCCEST: gi|208291829|gb|GE093315.1|GE093315
genomic: TGGCGTTGTTTTTGATGTACCAGCTAAAGATTTAGACATATATCTTAATGgtaaagctct ... tgttcttcagGTCAGGAAAATGCC
EST: TGGCGTTGTTTTTGATGTACCAGCTAAAGATTTAGACATATATCTTAATG GTCAGGAAAATGCCTCGAATGTATGTTTAGAGGTAGTGAAAACACTGCCACEST: gi|208190303|gb|GD991847.1|GD991847
genomic: TGGCGTTGTTTTTGATGTACCAGCTAAAGATTTAGACATATATCTTAATGgtaaagctct ... tgttcttcagGTCAGGAAAATGCCTCGAATGTATGTTTAGAGGTAGTGAAAACACTGCCAC
EST: ACCAGCTAAAGATTTAGACATATATCTTAATG GTCAGGAAAATGCCTCGAATGTATGTTTAGAGGTAGTGAAAACACTGCCAC
genomic: ACCAGCTAAAGATTTAGACATATATCTTAATGgtaaagctct ... tgttcttcagGTCAGGAAAATGCCTCGAATGTATGTTTAGAGGTAGTGAAAACACTGCCAC
catttcaacaatatagttggtcatatttttcaattgaatcacgtttgttcttcagGTCAGGAAAATGCCTCGAATGTATGTTTAGAGGTAGTGAAAACACTGCCACAGTTGCAACAGAAAGAGCCACAATCAAGAGGTGGCAGATTTGGTGATAA
tttgttcttc CT-rich tract
atatttttcaattgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagctctacttaactgttaacgtaggatttgagcactttcatgagtatcttatcaaacttgaattatcactctgggtctacatttcaacaatatagttggtcatatttttcaattgaatcacgtttgttcttcagGTCAGGAAAATGCCTCGAATGTATGTTTAGAGGTAGTGAAAACACTGCCACAGTTGCAACAGAAAGAGCCACAATCAAGAGGTGGCAGATTTGGTGATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT