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...ccatctaactctatgtgtccattgttcacctctaagccattattataagtttgtggagaattctgttattgatttgacatatttcatcctctccgaacagGTCCTTGATGATACAAGCAGTGTTCGTGCCTCTCTTCGGAAGAGATTGACGGCTGATGATCCTGATCTCACAACAGATGAACAACTCAGAATAAAGGAGT
species | Glycine max |
transcript | GLYMA10G34370.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: AGCTTATAACCTCTCCCAACAAAGATGGCCATGTCAACAATTTTATTCAA GTCCTTGATGATACAAGCAGTGTTCGTGCCTCTCTTCGGAAGAGATTGACGEST: gi|21602622|gb|BQ612953.1|BQ612953
genomic: AGCTTATAACCTCTCCCAACAAAGATGGCCATGTCAACAATTTTATTCAAgtaagtctga ... ctccgaacagGTCCTTGATGATACAAGCAGTGTTCGTGCCTCTCTTCGGAAGAGATTGACG
EST: CAACAATTTTATTCAA GTCCTTGATGATACAAGCAGTGTTCGTGCCTCTCTTCGGAAGAGATTGACGEST: gi|192333297|gb|FK024274.1|FK024274
genomic: CAACAATTTTATTCAAgtaagtctga ... ctccgaacagGTCCTTGATGATACAAGCAGTGTTCGTGCCTCTCTTCGGAAGAGATTGACG
EST: AGCTTATAACCTCTCCCAACAAAGATGGCCATGTCAACAATTTTATTCAA GTCCTTGATGATACAAGCAGTGTTCGTGCCTTTCTTCGGAAGAGATTGACGEST: gi|209709967|gb|BW681010.1|BW681010
genomic: AGCTTATAACCTCTCCCAACAAAGATGGCCATGTCAACAATTTTATTCAAgtaagtctga ... ctccgaacagGTCCTTGATGATACAAGCAGTGTTCGTGCCTCTCTTCGGAAGAGATTGACG
EST: AGCTTATAACCTCTCCCAACAAAGATGGCCATGTCAACAATTTTATTCAA GTCCTTGATGATACAAGCAGTGTTCGTGCCTCTCTTCGGAAGAGATTGACGEST: gi|214005577|gb|DB984585.1|DB984585
genomic: AGCTTATAACCTCTCCCAACAAAGATGGCCATGTCAACAATTTTATTCAAgtaagtctga ... ctccgaacagGTCCTTGATGATACAAGCAGTGTTCGTGCCTCTCTTCGGAAGAGATTGACG
EST: AGCTTATAACCTCTCCCAACAAAGATGGCCATGTCAACAATTTTATTCAA GTCCTTGATGATACAAGCAGTGTTCGTGCCTCTCTTCGGAAGAGATTGACGEST: gi|31311023|gb|CD396226.1|CD396226
genomic: AGCTTATAACCTCTCCCAACAAAGATGGCCATGTCAACAATTTTATTCAAgtaagtctga ... ctccgaacagGTCCTTGATGATACAAGCAGTGTTCGTGCCTCTCTTCGGAAGAGATTGACG
EST: AGCTTATAACCTCTCCCAACAAAGATGGCCATGTCAACAATTTTATTCAA GTCCTTGATGATACAAGCAGTGTTCGTGCCTCTCTTCGGAAGAGATTGACGEST: gi|151406054|gb|EV275869.1|EV275869
genomic: AGCTTATAACCTCTCCCAACAAAGATGGCCATGTCAACAATTTTATTCAAgtaagtctga ... ctccgaacagGTCCTTGATGATACAAGCAGTGTTCGTGCCTCTCTTCGGAAGAGATTGACG
EST: AGCTTATAACCTCTCCCAACAAAGATGGCCATGTCAACAATTTTATTCAA GTCCTTGATGATACAAGCAGTGTTCGTGCCTCTCTTCGGAAGAGATTGACGEST: gi|58018836|gb|CX705578.1|CX705578
genomic: AGCTTATAACCTCTCCCAACAAAGATGGCCATGTCAACAATTTTATTCAAgtaagtctga ... ctccgaacagGTCCTTGATGATACAAGCAGTGTTCGTGCCTCTCTTCGGAAGAGATTGACG
EST: AGCTTATAACCTCTCCCAACAAAGATGGCCATGTCAACAATTTTATTCAA GTCCTTGATGATACAAGCAGTGTTCGTGCCTCTCTTCGGAAGAGATTGACG
genomic: AGCTTATAACCTCTCCCAACAAAGATGGCCATGTCAACAATTTTATTCAAgtaagtctga ... ctccgaacagGTCCTTGATGATACAAGCAGTGTTCGTGCCTCTCTTCGGAAGAGATTGACG
taagtttgtggagaattctgttattgatttgacatatttcatcctctccgaacagGTCCTTGATGATACAAGCAGTGTTCGTGCCTCTCTTCGGAAGAGATTGACGGCTGATGATCCTGATCTCACAACAGATGAACAACTCAGAATAAAGGAGT
tatttcatcctctcc CT-rich tract
ttattgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccatctaactctatgtgtccattgttcacctctaagccattattataagtttgtggagaattctgttattgatttgacatatttcatcctctccgaacagGTCCTTGATGATACAAGCAGTGTTCGTGCCTCTCTTCGGAAGAGATTGACGGCTGATGATCCTGATCTCACAACAGATGAACAACTCAGAATAAAGGAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
ccatcta
- - - - - ctatgtg
- - - - - - - - - - - - - cacctct
- - - - - - - - - - - - - - - - - agccatt
- - - - - - - - - - - - - - - - - - - - - - - - gtttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatttg