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gtaaacatcattcattatgggttttttttttttgacaaaaatgttaattgtttgatatattcatgatgttaactgtatcatctgaaacatatatactctggtgtcagGGAATTGCTGTTTGTGATCTACCTGGTGATACCATGCTCCCTGGAGAAATGTAACAAGCCTAAATCTCCTGAATACCAAAGCAGATATTGAAATAGGTCC
species | Glycine max |
transcript | GLYMA10G34150.2 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: AAGCTGAGTTGTTGGCCGAGAAGAGATGTGTGGCTCACCTAACAGGCGAG GGAATTGCTGTTTGTGATCTACCTGGTGATACCATGCTCCCTGGAGAAATGEST: gi|15203194|gb|BI425962.1|BI425962
genomic: AAGCTGAGTTGTTGGCCGAGAAGAGATGTGTGGCTCACCTAACAGGCGAGgtaaacatca ... ctggtgtcagGGAATTGCTGTTTGTGATCTACCTGGTGATACCATGCTCCCTGGAGAAATG
EST: AAGCTGAGTTGTTGGCCGAGAAGAGATGTGTGGCTCACCTAACAGGCGAG GGAATTGCTGTTTGTGATCTACCTGGTGATACCATGCTCCCTGGAGAAATGEST: gi|213594850|gb|DB979546.1|DB979546
genomic: AAGCTGAGTTGTTGGCCGAGAAGAGATGTGTGGCTCACCTAACAGGCGAGgtaaacatca ... ctggtgtcagGGAATTGCTGTTTGTGATCTACCTGGTGATACCATGCTCCCTGGAGAAATG
EST: AGCTGAGTTGATT-GCCGAGAAGAGATGTGTGGCTCACCTAACAGGCGAG GGAATTGCTGTTTGTGATCTACCTGGTGATACCATGCTCCCTGGAGAAATGEST: gi|8404003|gb|BE059637.1|BE059637
genomic: AGCTGAGTTG-TTGGCCGAGAAGAGATGTGTGGCTCACCTAACAGGCGAGgtaaacatca ... ctggtgtcagGGAATTGCTGTTTGTGATCTACCTGGTGATACCATGCTCCCTGGAGAAATG
EST: AAGCTGAGTTGTTGGCCGAGAAGAGATGTGTGGCTCACCTAACAGGCGAG GGAATTGCTGTTTGTGATCTACCTGGTGATACCATGCTCCCTGGAGAAATGEST: gi|209709700|gb|BW673968.1|BW673968
genomic: AAGCTGAGTTGTTGGCCGAGAAGAGATGTGTGGCTCACCTAACAGGCGAGgtaaacatca ... ctggtgtcagGGAATTGCTGTTTGTGATCTACCTGGTGATACCATGCTCCCTGGAGAAATG
EST: AAGCTGAGTTGTTGGCCGAGAAGAGATGTGTGGCTCACCTAACAGGCGAG GGAATTGCTGTTTGTGATCTACCTGGTGATACCATGCTCCCTGGAGAAATGEST: gi|31308302|gb|CD393505.1|CD393505
genomic: AAGCTGAGTTGTTGGCCGAGAAGAGATGTGTGGCTCACCTAACAGGCGAGgtaaacatca ... ctggtgtcagGGAATTGCTGTTTGTGATCTACCTGGTGATACCATGCTCCCTGGAGAAATG
EST: AAGCTGAGTTGTTGGCCGAGAAGAGATGTGTGGCTCACCTAACAGGCGAG GGAATTGCTGTTTGTGATCTACCTGGTGATACCATGCTCCCTGGAGAAATG
genomic: AAGCTGAGTTGTTGGCCGAGAAGAGATGTGTGGCTCACCTAACAGGCGAGgtaaacatca ... ctggtgtcagGGAATTGCTGTTTGTGATCTACCTGGTGATACCATGCTCCCTGGAGAAATG
tgatatattcatgatgttaactgtatcatctgaaacatatatactctggtgtcagGGAATTGCTGTTTGTGATCTACCTGGTGATACCATGCTCCCTGGAGAAATGTAACAAGCCTAAATCTCCTGAATACCAAAGCAGATATTGAAATAGGTCC
tgttaac putative branch site (score: 2)
aaacatatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacatcattcattatgggttttttttttttgacaaaaatgttaattgtttgatatattcatgatgttaactgtatcatctgaaacatatatactctggtgtcagGGAATTGCTGTTTGTGATCTACCTGGTGATACCATGCTCCCTGGAGAAATGTAACAAGCCTAAATCTCCTGAATACCAAAGCAGATATTGAAATAGGTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT