1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ttatgtctcgtttctcaatctcatatattatcgttttacttgtttttcctcgcattatgtaatatacctgctgatctgatcttcgaacatcttgttgcagCGTGTGACGGAGAAACAAAATAAGGTCAAGCTGACTGATAGGATGTGGGCTAGACTTCTTGCATCGACGAATCAACCAAGTTTCGTTGCCTCTGATCAAG
species | Glycine max |
transcript | GLYMA10G33820.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GCTTCACAGTCGGGCCTGTGAACAGTAAACATGCTTATATCCCAATTGCC CGTGTGACGGAGAAACAAAATAAGGTCAAGCTGACTGATAGGATGTGGGCTEST: gi|213590983|gb|DB975155.1|DB975155
genomic: GCTTCACAGTCGGGCCTGTGAACAGTAAACATGCTTATATCCCAATTGCCgtgagtggtt ... cttgttgcagCGTGTGACGGAGAAACAAAATAAGGTCAAGCTGACTGATAGGATGTGGGCT
EST: GCTTCACAGTCGGGCCTGTGAACAGTAAACATGCTTATATCCCAATTGCC CGTGTGACGCAGAAACAAAATAAGGTCAAGCTGACTGATAGGATGTGGGCTEST: gi|14991854|gb|BI317527.1|BI317527
genomic: GCTTCACAGTCGGGCCTGTGAACAGTAAACATGCTTATATCCCAATTGCCgtgagtggtt ... cttgttgcagCGTGTGACGGAGAAACAAAATAAGGTCAAGCTGACTGATAGGATGTGGGCT
EST: GCTTCACAGTCGGGCCTGTGAACAGTAAACATGCTTATATCCCAATTGCC CGTGTGACGGAGAAACAAAATAAGGTCAAGCTGACTGATAGGATGTGGGCTEST: gi|209713394|gb|BW681462.1|BW681462
genomic: GCTTCACAGTCGGGCCTGTGAACAGTAAACATGCTTATATCCCAATTGCCgtgagtggtt ... cttgttgcagCGTGTGACGGAGAAACAAAATAAGGTCAAGCTGACTGATAGGATGTGGGCT
EST: GCTTCACAGTCGGGCCTGTGAACAGTAAACATGCTTATATCCCAATTGCC CGTGTGACGGAGAAACAAAATAAGGTCAAGCTGACTGATAGGATGTGGGCT
genomic: GCTTCACAGTCGGGCCTGTGAACAGTAAACATGCTTATATCCCAATTGCCgtgagtggtt ... cttgttgcagCGTGTGACGGAGAAACAAAATAAGGTCAAGCTGACTGATAGGATGTGGGCT
ttcctcgcattatgtaatatacctgctgatctgatcttcgaacatcttgttgcagCGTGTGACGGAGAAACAAAATAAGGTCAAGCTGACTGATAGGATGTGGGCTAGACTTCTTGCATCGACGAATCAACCAAGTTTCGTTGCCTCTGATCAAG
tcttgtt CT-rich tract
attatgtaatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatgtctcgtttctcaatctcatatattatcgttttacttgtttttcctcgcattatgtaatatacctgctgatctgatcttcgaacatcttgttgcagCGTGTGACGGAGAAACAAAATAAGGTCAAGCTGACTGATAGGATGTGGGCTAGACTTCTTGCATCGACGAATCAACCAAGTTTCGTTGCCTCTGATCAAG
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