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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccaaataagtttacttgttaaatatatatattttttctacctcattgttctggacttgttgccattcaacaattgatgatgctagtgatatggtttttaaactttgtgagcggctaaatttatctcttattgcccctagtgcagGAGTTGACCCTCCCTCATCTCGTGATCCACCATTCCCTGCTGCTGTCACAGCATCTAATCATCTAACTAGCTCTTTAACGACAGAATCAACTGCATCTGG

Basic information

species Glycine max
transcript GLYMA10G04850.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G04850.1 (Glycine max), 3'ss of exon 13
lower sequence: LOC_Os02g40430.1 (Oryza sativa), 3'ss of exon 14
gtaccaaataagtttacttgttaaatatatatattttttctacctcattgttctggacttgttgccattcaacaattgatgatgctagtgatatggtttttaaactttgtgagcggctaaatttatctcttattgcccctagtgcagGAGTTGACCCTCCCTCATCTCGTGATCCACCATTCCCTGCTGCTGTCACAGCATCTAATCATCTAACT------AGCTCTTTAACGACAGAATCAACTGCATCTGG
           || | ||| | |  |   ||  |    | | |    |  || || | ||        | | | |||| |  | | | | ||||  | |  | ||||    |    | |  | | | |  | || | ||||||||||||||||| ||||| || ||||||||||| ||  ||||   |||||  || || ||  | |||||  ||      |  ||  ||  |   || ||| |         
-----------gtattctt-taagctgcttaattggagtttgctctttcattatgtagtttaaaattcttagctattgctt-tccgacttatat--tataaatacttaagaaatctcaatttcttttttcttttcctcctagtgcagGAGTTGATCCTCCATCCTCTCGTGATCCTCCTATCCCACTTGCTGCAACTGCTTCGGACCATCTGTCTTTGCAGAATTCCATATTGCTGGATTCATCCCT------

upper sequence: GLYMA10G04850.1 (Glycine max), 3'ss of exon 13
lower sequence: GRMZM2G052078_T02 (Zea mays), 3'ss of exon 13
gtaccaaataagtttacttgttaaatatatatattttttctacctcattgttctggacttgttgccattcaacaattgatgatgctagtgatatggttttta--aactttgtgagcggctaaat---ttatctcttattgcccctagtgcagGAGTTGACCCTCCCTCATCTCGTGATCCACCATTCCCTGCTGCTGTCACAGCATCTAATCATCTAACTAGCTCTTTAACGACAGAATCAACTGCATCTGG
                                                      ||  || ||    |   |    | | |   |   |  |||  |||| |   |   | | |  |  | |||   |||| |  | ||   ||||||||||||||||| ||||| |||||||||||||| ||  | |    ||| |   ||||||| |||  |||| |           |  ||   |      ||||   
----------------------------------------------------ggggcattattaatttattatgcatcagggaacacattctatttttttcactgatactataaaagttttaatttcttatttgcttttaatcctagtgcagGAGTTGATCCTCCATCATCTCGTGATCCTCCTGTGCTGCTTGCAGCACCAGCATCAAATGTTCTATCATTGCAGAACTCAGCACTGTTGGACTCATCCCT

upper sequence: GLYMA10G04850.1 (Glycine max), 3'ss of exon 13
lower sequence: AT2G20190.1 (Arabidopsis thaliana), 3'ss of exon 13
gtaccaaataagtttacttgttaaatatatatattttttctacctcattgttctggacttgttgccattcaacaattgatgatgctagtgatatggtttttaaactttgtgagcggctaaatttatctcttattgcccctagtgcagGAGTTGACCCTCCCTCATCTCGTGATCCACCATTCCCTGCTGCTGTCACAGCATCTAATCATCTAACTAGCTCTTTAACGACAGAATCAACTGCATCTGG-
                               ||||   | |   || || |    |    |||    ||  | |  |       |   | | |||   |   |  |   || || ||||||||  |||  | || ||||||||||||||||||||||||| || ||||||||||| || |||| ||||| ||   ||||||| |||  ||  || ||      | |  | ||||||||  |||     
------------------------------gtattgagtttctttccttatgaaagtacagtttgtttttgaaacgt-------cctttaacatgagctaagatatccttgcgcagctaaatt-gtcttctttttcccctagtgcagGAGTTGACCCTCCATCGTCTCGTGATCCTCCTTTCCATGCTGTTGCTCCAGCATCCAATAGTCACACAAGTAGCGCAGCTGCTGAATCAAC-ACATAGTAT

upper sequence: GLYMA10G04850.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv07s0005g05030.t01 (Vitis vinifera), 3'ss of exon 10
--------------------------------------gtaccaaataagtttacttgttaaatatatatattttttctacctcattgttctggacttgttgcc--attcaacaattg-----atgatgctagtgatatggtttttaaactttgtgagcggctaaatttatctcttattgcccctagtgcagGAGTTGACCCTCCCTCATCTCGTGATCCACCATTCCCTGCTGCTGTCACAGCATCTAATCATCTAACTAGCTCTTTAACGACAGAATCAACTGCATCTGG
                                        |  | || | |||   ||| || | |||  |  | ||| |     ||  | | || |   |  |  ||| | |||| |     | || |||     ||  ||||  | | ||| ||| ||||||| ||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |||  ||||||  ||||||| ||||| || || | | |||  | |  |||||||| ||| ||| |
gtattgaatggttttgtcaattagattattatctttgatcataatattaatttgactgtcaa-tctatgaagctattcaatggt-ttactgttgaatcactatctgattgaccaatggtcaaaacgaagctgtctttaatgtttgaacaatttatgaacggctaagtttttctcttattgcccctagcgcagGAGTTGACCCTCCATCATCTCGTGATCCTCCATTTCCTCTTGCTGTTCCAGCATCAAATCAACTTACAAACACTTCGATGGTAGAATCAAATGCTTCTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggtttttaaactttgtgagcggctaaatttatctcttattgcccctagtgcagGAGTTGACCCTCCCTCATCTCGTGATCCACCATTCCCTGCTGCTGTCACAGCATCTAATCATCTAACTAGCTCTTTAACGACAGAATCAACTGCATCTGG
                      ggctaaa  putative branch site (score: 3)
                                 tctcttattgcccct  putative PPT
                         taaatttatctcttat  TA-rich tract