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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaaaagagaagatacttggagctcaactttcagttttatttgctatttagctagtcactcatgaattgatttgtttgtatttttggaaaatattctacagGTTGGAGTATGAGCAAAATCGGGATATGAATTCACGAATTCAAGATTTGGAATCTTCTCTTGGTGCTTTAGAGAAAGATTTAAAACGTGTACATGACAGA

Basic information

species Glycine max
transcript GLYMA10G04300.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23725574|gb|BU760746.1|BU760746
EST:     GCAGAGGAGAGGCTGAACCTGAGTAGCCAACTCTCAAAATTAAAATATCA                         GTTGGAGTATGAGCAAAATCGGGATATGAATTCACGAATTCAAGATTTGGA
genomic: GCAGAGGAGAGGCTGAACCTGAGTAGCCAACTCTCAAAATTAAAATATCAgtgtgttcct ... tattctacagGTTGGAGTATGAGCAAAATCGGGATATGAATTCACGAATTCAAGATTTGGA
EST: gi|208041279|gb|GD841686.1|GD841686
EST:     GCAGAGGAGAGGCTGAACCTGAGTAGCCAACTCTCAAAATTAAAATATCA                         GTTGGAGTATGAGCAAAATCGGGATATGAATTCACGAATTCAAGATTTGGA
genomic: GCAGAGGAGAGGCTGAACCTGAGTAGCCAACTCTCAAAATTAAAATATCAgtgtgttcct ... tattctacagGTTGGAGTATGAGCAAAATCGGGATATGAATTCACGAATTCAAGATTTGGA
EST: gi|193331305|gb|FK294179.1|FK294179
EST:     GCAGAGGAGAGGCTGAACCTGAGTAGCCAACTCTCAAAATTAAAATATCA                         GTTGGAGTATGAGCAAAATCGGGATATGAATTCACGAATTCAAGATTTGGA
genomic: GCAGAGGAGAGGCTGAACCTGAGTAGCCAACTCTCAAAATTAAAATATCAgtgtgttcct ... tattctacagGTTGGAGTATGAGCAAAATCGGGATATGAATTCACGAATTCAAGATTTGGA
EST: gi|208078606|gb|GD876138.1|GD876138
EST:     GCAGAGGAGAGGCTGAACCTGAGTAGCCAACTCTCAAAATTAAAATATCA                         GTTGGAGTATGAGCAAAATCGGGATATGAATTCACGAATTCAAGATTTGGA
genomic: GCAGAGGAGAGGCTGAACCTGAGTAGCCAACTCTCAAAATTAAAATATCAgtgtgttcct ... tattctacagGTTGGAGTATGAGCAAAATCGGGATATGAATTCACGAATTCAAGATTTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttagctagtcactcatgaattgatttgtttgtatttttggaaaatattctacagGTTGGAGTATGAGCAAAATCGGGATATGAATTCACGAATTCAAGATTTGGAATCTTCTCTTGGTGCTTTAGAGAAAGATTTAAAACGTGTACATGACAGA
                  aattgat  putative branch site (score: 4)
                  aattgatttgtttgta  TA-rich tract