1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtttgatgtgcctcttgtttctctttgtaattatgctagtgtctcaacaaaactaaatttatttattctgggttttgcttttgttagGTGGATATGCAGCTGGATACTATAGTTACAAG
species | Glycine max |
transcript | GLYMA09G33490.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TCCATTACCAGAGGATAGGTTCCTTTGCAGCTTTAGCCATATATTTGCAG GTGGATATGCAGCTGGATACTATAGTTACAAGEST: gi|17963650|gb|BM270397.1|BM270397
genomic: TCCATTACCAGAGGATAGGTTCCTTTGCAGCTTTAGCCATATATTTGCAGgtttgatgtg ... cttttgttagGTGGATATGCAGCTGGATACTATAGTTACAAG
EST: TCCATTACCAGAGGATAGGTTCCTTTGCAGCTTTAGCCATATATTTGCAG GTGGATATGCAGCTGGATACTATAGTTACAAGEST: gi|15589634|gb|BI674250.1|BI674250
genomic: TCCATTACCAGAGGATAGGTTCCTTTGCAGCTTTAGCCATATATTTGCAGgtttgatgtg ... cttttgttagGTGGATATGCAGCTGGATACTATAGTTACAAG
EST: TCCATTACCAGAGGATAGGTTCCTTTGCAGCTTTAGCCATATATTTGCAG GTGGATATGCAGCTGGATACTATAGTTACAAGEST: gi|254348574|gb|GR852253.1|GR852253
genomic: TCCATTACCAGAGGATAGGTTCCTTTGCAGCTTTAGCCATATATTTGCAGgtttgatgtg ... cttttgttagGTGGATATGCAGCTGGATACTATAGTTACAAG
EST: TCCATTACCAGAGGATAGGTTCCTTTGCAGCTTTAGCCATATATTTGCAG GTGGATATGCAGCTGGATACTATAGTTACAAGEST: gi|207715848|gb|GD697966.1|GD697966
genomic: TCCATTACCAGAGGATAGGTTCCTTTGCAGCTTTAGCCATATATTTGCAGgtttgatgtg ... cttttgttagGTGGATATGCAGCTGGATACTATAGTTACAAG
EST: TCCATTACCAGAGGATAGGTTCCTTTGCAGCTTTAGCCATATATTTGCAG GTGGATATGCAGCTGGATACTATAGTTACAAGEST: gi|21889700|gb|BQ742913.1|BQ742913
genomic: TCCATTACCAGAGGATAGGTTCCTTTGCAGCTTTAGCCATATATTTGCAGgtttgatgtg ... cttttgttagGTGGATATGCAGCTGGATACTATAGTTACAAG
EST: TCCATTACCAGAGGATAGGTTCCTTTGCAGCTTTAGCCATATATTTGCAG GTGGATATGCGGCTGGATACTATAGTTACAAG
genomic: TCCATTACCAGAGGATAGGTTCCTTTGCAGCTTTAGCCATATATTTGCAGgtttgatgtg ... cttttgttagGTGGATATGCAGCTGGATACTATAGTTACAAG
atgctagtgtctcaacaaaactaaatttatttattctgggttttgcttttgttagGTGGATATGCAGCTGGATACTATAGTTACAAG
aactaaa putative branch site (score: 2)
ttttgctttt putative PPT
tcaacaaaactaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgatgtgcctcttgtttctctttgtaattatgctagtgtctcaacaaaactaaatttatttattctgggttttgcttttgttagGTGGATATGCAGCTGGATACTATAGTTACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA