1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...aaagtgtgcttggtttgagtttgtcattaaataaaattaaatccttggtttacttcgtcactcacattcatttctgacaaaacacttgtctctattgaagGTGAAAGAGCTAGAGAAAAAGATGAAAGAACAACTGCAGTCAGAATCAGCAAGTTTTCAACAGAAG
species | Glycine max |
transcript | GLYMA09G33340.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: AATTGAGAGGAAAAGAAGAAACCTGCAGTACTCTTCAACAAAAG GTGAAAGAGCTAGAGAAAAAGATGAAAGAACAACTGCAGTCAGAATCAGCAEST: gi|208068153|gb|GD861887.1|GD861887
genomic: AATTGAGAGGAAAAGAAGAAACCTGCAGTACTCTTCAACAAAAGgttggttttt ... tctattgaagGTGAAAGAGCTAGAGAAAAAGATGAAAGAACAACTGCAGTCAGAATCAGCA
EST: AATTGAGAGGAAAAGAAGAAACCTGCAGTACTCTTCAACAAAAG GTGAAAGAGCTAGAGAAAAAGATGAAAGAACAACTGCAGTCAGAATCAGCAEST: gi|192309002|gb|FK001778.1|FK001778
genomic: AATTGAGAGGAAAAGAAGAAACCTGCAGTACTCTTCAACAAAAGgttggttttt ... tctattgaagGTGAAAGAGCTAGAGAAAAAGATGAAAGAACAACTGCAGTCAGAATCAGCA
EST: CTGACAAATTGAGAGGAAAAGAAGAAACCTGCAGTACTCTTCAACAAAAG GTGAAAGAGCTAGAGAAAAAGATGAAAGAACAACTGCAGTCAGAATCAGCA
genomic: CTGACAAATTGAGAGGAAAAGAAGAAACCTGCAGTACTCTTCAACAAAAGgttggttttt ... tctattgaagGTGAAAGAGCTAGAGAAAAAGATGAAAGAACAACTGCAGTCAGAATCAGCA
tggtttacttcgtcactcacattcatttctgacaaaacacttgtctctattgaagGTGAAAGAGCTAGAGAAAAAGATGAAAGAACAACTGCAGTCAGAATCAGCAAGTTTTCAACAGAAG
ttctgac putative branch site (score: 2)
cttgtctct putative PPT
attcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaagtgtgcttggtttgagtttgtcattaaataaaattaaatccttggtttacttcgtcactcacattcatttctgacaaaacacttgtctctattgaagGTGAAAGAGCTAGAGAAAAAGATGAAAGAACAACTGCAGTCAGAATCAGCAAGTTTTCAACAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - tgcttgg
- - - - - - - - gagtttg
- - - - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacttgt