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...atctatgttggatttaatcaaataatttaaattcatgtctgcatgggatcctttgtatgctataatccatctcatcaggagctaattttatttaaaacagGATGAATGGACGGGGGAGCAGAAATTGCAGTACAGTGATATTCCTGAAGATATTGAACCTGAAGAAATTCGACCAATGGGAAATTATGCAGTTTCAATAA
species | Glycine max |
transcript | GLYMA09G31980.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TTCTGCATCCTGCAACAGTGAGACGGAATGATCGTTCTGCTCAAAGTGTG GATGAATGGACGGGGGAGCAGAAATTGCAGTACAGTGATATTCCTGAAGATEST: gi|22524615|gb|BU083426.1|BU083426
genomic: TTCTGCATCCTGCAACAGTGAGACGGAATGATCGCTCTGCTCAAAGTGTGgtatgtggat ... tttaaaacagGATGAATGGACGGGGGAGCAGAAATTGCAGTACAGTGATATTCCTGAAGAT
EST: TTCTGCATCCTGCAACAGTGAGACGGAATGATCGCTCTGCTCAAAGTGTG GATGAATGGACGGGGGAGCAGAAATTGCAGTACAGTGATATTCCTGAAGATEST: gi|7283893|gb|AW596495.1|AW596495
genomic: TTCTGCATCCTGCAACAGTGAGACGGAATGATCGCTCTGCTCAAAGTGTGgtatgtggat ... tttaaaacagGATGAATGGACGGGGGAGCAGAAATTGCAGTACAGTGATATTCCTGAAGAT
EST: TTCTGCATCCTGCAACAGTGAGACGGAATGATCGCTCTGCTCAAAGTGTG GATGAATGGACGGGGGAGCAGAAATTGCAGTACAGTGATATTCCTGAAGATEST: gi|23052872|gb|BU577363.1|BU577363
genomic: TTCTGCATCCTGCAACAGTGAGACGGAATGATCGCTCTGCTCAAAGTGTGgtatgtggat ... tttaaaacagGATGAATGGACGGGGGAGCAGAAATTGCAGTACAGTGATATTCCTGAAGAT
EST: TTCTGCATCCTGCAACAGTGAGACGGAATGATCGCTCTGCTCAAAGTGTG GATGAATGGACGGGGGAGCAGAAATTGCAGTACAGTGATATTCCTGAAGATEST: gi|22523020|gb|BU081831.1|BU081831
genomic: TTCTGCATCCTGCAACAGTGAGACGGAATGATCGCTCTGCTCAAAGTGTGgtatgtggat ... tttaaaacagGATGAATGGACGGGGGAGCAGAAATTGCAGTACAGTGATATTCCTGAAGAT
EST: TTCTGCATCCTGCAACAGTGAGACGGAATGATCGCTCTGCTCAAAGTGTG GATGAATGGACGGGGGAGCAGAAATTGCAGTACAGTGATATTCCTGAAGATEST: gi|120530612|gb|EH258745.1|EH258745
genomic: TTCTGCATCCTGCAACAGTGAGACGGAATGATCGCTCTGCTCAAAGTGTGgtatgtggat ... tttaaaacagGATGAATGGACGGGGGAGCAGAAATTGCAGTACAGTGATATTCCTGAAGAT
EST: TTCTGCATCCTGCAACAGTGAGACGGAATGATCGCTCTGCTCAAAGTGTG GATGAATGGACGGGGGAGCAGAAATTGCAGTACAGTGATATTCCTGAAGATEST: gi|192315738|gb|FK011206.1|FK011206
genomic: TTCTGCATCCTGCAACAGTGAGACGGAATGATCGCTCTGCTCAAAGTGTGgtatgtggat ... tttaaaacagGATGAATGGACGGGGGAGCAGAAATTGCAGTACAGTGATATTCCTGAAGAT
EST: TTCTGCATCCTGCAACAGTGAGACGGAATGATCGCTCTGCTCAAAGTGTG GATGAATGGACGGGGGAGCAGAAATTGCAGTACAGTGATATTCCTGAAGATEST: gi|31459846|gb|CD401874.1|CD401874
genomic: TTCTGCATCCTGCAACAGTGAGACGGAATGATCGCTCTGCTCAAAGTGTGgtatgtggat ... tttaaaacagGATGAATGGACGGGGGAGCAGAAATTGCAGTACAGTGATATTCCTGAAGAT
EST: TTCTGCATCCTGCAACAGTGAGACGGAATGATCGCTCTGCTCAAAGTGTG GATGAATGGACGGGGGAGCAGAAATTGCAGTACAGTGATATTCCTGAAGATEST: gi|192308964|gb|FK001740.1|FK001740
genomic: TTCTGCATCCTGCAACAGTGAGACGGAATGATCGCTCTGCTCAAAGTGTGgtatgtggat ... tttaaaacagGATGAATGGACGGGGGAGCAGAAATTGCAGTACAGTGATATTCCTGAAGAT
EST: TTCTGCATCCTGCAACAGTGAGACGGAATGATCGCTCTGCTCAAAGTGTG GATGAATGGACGGGGGAGCAGAAATTGCAGTACAGTGATATTCCTGAAGAT
genomic: TTCTGCATCCTGCAACAGTGAGACGGAATGATCGCTCTGCTCAAAGTGTGgtatgtggat ... tttaaaacagGATGAATGGACGGGGGAGCAGAAATTGCAGTACAGTGATATTCCTGAAGAT
ggatcctttgtatgctataatccatctcatcaggagctaattttatttaaaacagGATGAATGGACGGGGGAGCAGAAATTGCAGTACAGTGATATTCCTGAAGATATTGAACCTGAAGAAATTCGACCAATGGGAAATTATGCAGTTTCAATAA
agctaat putative branch site (score: 3)
ttttattt CT-rich tract
taattttatttaaaac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctatgttggatttaatcaaataatttaaattcatgtctgcatgggatcctttgtatgctataatccatctcatcaggagctaattttatttaaaacagGATGAATGGACGGGGGAGCAGAAATTGCAGTACAGTGATATTCCTGAAGATATTGAACCTGAAGAAATTCGACCAATGGGAAATTATGCAGTTTCAATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - atgttgg
- - - - - - - - - - - - - - - - tcatgtc
- - - - - - - - - - - - - - - - - - - -tgcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatctc